| Definition | Clostridium tetani E88 chromosome, complete genome. |
|---|---|
| Accession | NC_004557 |
| Length | 2,799,251 |
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The map label for this gene is 28210426
Identifier: 28210426
GI number: 28210426
Start: 726473
End: 727462
Strand: Direct
Name: 28210426
Synonym: CTC00704
Alternate gene names: NA
Gene position: 726473-727462 (Clockwise)
Preceding gene: 28210425
Following gene: 28210427
Centisome position: 25.95
GC content: 23.84
Gene sequence:
>990_bases TTGGTGATTTGTATGAAGTATATAAAAACTAAATGCTCTAAATCTTTAAGGGTACTTACAATATATGAAAGATTAAGTAC GGGGGGAATAATAAATAAAAAAGAATTAGCATATGAATTTGGAGTGGATGAAAAATCTATACAAAGAGATATTAATGATT TAAGGGCATATTTTCAGGAATGTTATAAAGAAGATGTCCGAATAAAGTACTGTAGGAGTAGAAAAGGTTATATATTAGAG AAAGATAAGTTTTCATATTTAAATTATAAGGAAATAACAGCTATAACAAAAATATTATTAGATAGTAGAGCTTTTAATAA AAAAGAAATGTCATTATTATTAAATAAAGTAATTTTACAATGTATACCAGGGGAAAGAGAAAATATAAAGAATATATTAA ATAAAGAAGTATATAATTATGTGGAATTACAACATGGGAAAAAATTAATTGATATTCTGTTGGATATAGAGGAATGTATT AGAAAGAGAAAATATATAAATATAAAATATAAAAGGGTAGATAAGTCATTAATAAATAGAAAATTGAAACCTATAGGATT AATATTTAATAAATTCTATTTCTATTTAATTGCATATATTGAAAGTAAGGAGGAGGATTTTATAGCTACCTATAGGGTGG ACAGAATAGAAGAATATAAAATATTTGAAGAGTATTTTTATATTTCTCAAAAAAACAGATTTGAAGAAGGAGAATTTAGA AAGAAAATGCAATTTATGAGTTCAGGGGGACTTATAAATATTAAATTTTATTATTGGGGACCTTCATTGGAATTAGTTTT AGATAGACTTCCTACAGCGGAAGTCATAGGTGAAGAGAATAATAAGTATTTAATAAAGGCTAATGTATTGGGTAAAGGAA TTATCACATGGTTATTAAGTCAAAAAAACTTTTTAGAAGTATTGGAACCTTTTGAAATAAGAAATGAAATTAAAAACATA ATTAAGGATATGTTAAATATATATATTTAA
Upstream 100 bases:
>100_bases TCCAAAAAATTAAGATAAATGGACATTATATGTCTATGGAAATAGTTATAATAGTAAGTACAATAGAATATATAGAAAAT ACTAACAATAAATACGTGAA
Downstream 100 bases:
>100_bases TTATACCTTAGGTGTTTTTATAAGGTTAAAAAACATTTAAAAAGGGTGGGGAATTATGGTTGACAATGAAAAGGTGATTG AATGGAGTTATTATACTAGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 329; Mature: 329
Protein sequence:
>329_residues MVICMKYIKTKCSKSLRVLTIYERLSTGGIINKKELAYEFGVDEKSIQRDINDLRAYFQECYKEDVRIKYCRSRKGYILE KDKFSYLNYKEITAITKILLDSRAFNKKEMSLLLNKVILQCIPGERENIKNILNKEVYNYVELQHGKKLIDILLDIEECI RKRKYINIKYKRVDKSLINRKLKPIGLIFNKFYFYLIAYIESKEEDFIATYRVDRIEEYKIFEEYFYISQKNRFEEGEFR KKMQFMSSGGLINIKFYYWGPSLELVLDRLPTAEVIGEENNKYLIKANVLGKGIITWLLSQKNFLEVLEPFEIRNEIKNI IKDMLNIYI
Sequences:
>Translated_329_residues MVICMKYIKTKCSKSLRVLTIYERLSTGGIINKKELAYEFGVDEKSIQRDINDLRAYFQECYKEDVRIKYCRSRKGYILE KDKFSYLNYKEITAITKILLDSRAFNKKEMSLLLNKVILQCIPGERENIKNILNKEVYNYVELQHGKKLIDILLDIEECI RKRKYINIKYKRVDKSLINRKLKPIGLIFNKFYFYLIAYIESKEEDFIATYRVDRIEEYKIFEEYFYISQKNRFEEGEFR KKMQFMSSGGLINIKFYYWGPSLELVLDRLPTAEVIGEENNKYLIKANVLGKGIITWLLSQKNFLEVLEPFEIRNEIKNI IKDMLNIYI >Mature_329_residues MVICMKYIKTKCSKSLRVLTIYERLSTGGIINKKELAYEFGVDEKSIQRDINDLRAYFQECYKEDVRIKYCRSRKGYILE KDKFSYLNYKEITAITKILLDSRAFNKKEMSLLLNKVILQCIPGERENIKNILNKEVYNYVELQHGKKLIDILLDIEECI RKRKYINIKYKRVDKSLINRKLKPIGLIFNKFYFYLIAYIESKEEDFIATYRVDRIEEYKIFEEYFYISQKNRFEEGEFR KKMQFMSSGGLINIKFYYWGPSLELVLDRLPTAEVIGEENNKYLIKANVLGKGIITWLLSQKNFLEVLEPFEIRNEIKNI IKDMLNIYI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39448; Mature: 39448
Theoretical pI: Translated: 9.56; Mature: 9.56
Prosite motif: PS00304 SASP_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVICMKYIKTKCSKSLRVLTIYERLSTGGIINKKELAYEFGVDEKSIQRDINDLRAYFQE CEEEHHHHHHHHCCCCEEEEHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHH CYKEDVRIKYCRSRKGYILEKDKFSYLNYKEITAITKILLDSRAFNKKEMSLLLNKVILQ HHHCCCCEEECCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH CIPGERENIKNILNKEVYNYVELQHGKKLIDILLDIEECIRKRKYINIKYKRVDKSLINR HCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHC KLKPIGLIFNKFYFYLIAYIESKEEDFIATYRVDRIEEYKIFEEYFYISQKNRFEEGEFR CCCHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH KKMQFMSSGGLINIKFYYWGPSLELVLDRLPTAEVIGEENNKYLIKANVLGKGIITWLLS HHHHHHHCCCEEEEEEEEECCHHHHHHHCCCCHHHHCCCCCEEEEEECCHHHHHHHHHHC QKNFLEVLEPFEIRNEIKNIIKDMLNIYI CCHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MVICMKYIKTKCSKSLRVLTIYERLSTGGIINKKELAYEFGVDEKSIQRDINDLRAYFQE CEEEHHHHHHHHCCCCEEEEHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHH CYKEDVRIKYCRSRKGYILEKDKFSYLNYKEITAITKILLDSRAFNKKEMSLLLNKVILQ HHHCCCCEEECCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH CIPGERENIKNILNKEVYNYVELQHGKKLIDILLDIEECIRKRKYINIKYKRVDKSLINR HCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHC KLKPIGLIFNKFYFYLIAYIESKEEDFIATYRVDRIEEYKIFEEYFYISQKNRFEEGEFR CCCHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH KKMQFMSSGGLINIKFYYWGPSLELVLDRLPTAEVIGEENNKYLIKANVLGKGIITWLLS HHHHHHHCCCEEEEEEEEECCHHHHHHHCCCCHHHHCCCCCEEEEEECCHHHHHHHHHHC QKNFLEVLEPFEIRNEIKNIIKDMLNIYI CCHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA