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The map label for this gene is rpfG [H]

Identifier: 28210269

GI number: 28210269

Start: 540411

End: 541484

Strand: Direct

Name: rpfG [H]

Synonym: CTC00529

Alternate gene names: 28210269

Gene position: 540411-541484 (Clockwise)

Preceding gene: 28210268

Following gene: 28210270

Centisome position: 19.31

GC content: 29.42

Gene sequence:

>1074_bases
ATGAGGAGAAATATTATGAGGTTAGAGTTCATTGACAAAGTCAAAGACAACGAGGTGCTGGGTAAAAGTATATTGAGTTC
AGATGGTCAAATGCTGCTTAGAACAGGTATTAAATTAACTAATAACTATTTATCAAAACTAAAAGATATGGGTGTCTTAT
ATATATATGTAGAAGATGAAAGATTAGAGGATATAAATGTAGAAGATGAAAGGCTTATAGAATTAAAGCAAAGGACAATT
AAAAGTGTAGCAGATATTAGTAAAAACATCCATGGATACTCTGGGAAAAAGTTTAAAAAAGCTATATCATCAATAGAAAA
TCTTGTGGATTATATAATAGATATTGGTGATGTTAATAAAAGTCTATATGATATAAAAACTCATGATAATTATACATACC
TTCATTCTCTGGATACATGTGTAATGACTTCTTTTTTAGGAATTTCATTGGGCTTTAAAGAGGACGAGTTAAAAGATCTT
GGTATAGGGGCTTCACTGCATGATATAGGTAAAACACAAATACCTTTAAAGATATTAAATAAAAAAGGAAAATTAAATGA
TGAAGAATTTGCCGAAATAAAAAATCATACATTATATGGTGGCAAATTATTAAGAAATAATAAACAAATTTCTGAAAATG
TAATAGATATTGTAGAACAACATCATGAAAGAATCGATGGTAAAGGATATCCTTATAAATTACATGGAGATGAAATATCA
AAATATGCTAAAGTAGTTAGTTTGTGCGATGTATATGATGCCGTTAGCAGTGATAGATGTTATAGAAGGAAGTTCTCTCC
CAATGATGCATATGAGCTAATACTTGGGAATTCAGAAACAATGTTTGACATTGAGGTAGTTGAAAAATTTAAGGAAACTT
TCTCAATATATCCTTTGGGAGCTTGCGTTAAACTATCTAATGGAGTTGAAGGGTATGTTATACATCAAAATAGAGGTTTT
CCAGATAGGCCTTTGATAAGGGTTTTATATGACAGTGACACAAGGGAGCCAGTCCAATTTTATGAAATAGATTTATTAAA
ACACAAAAATCTAGTAATCAAAACTATAGTTTAA

Upstream 100 bases:

>100_bases
TGTATGTTCTATTTTAAATTATAGAAAAATGTGGTACTATATTGTTAATATTTATCTATAAAGAGAGAAATTATATTTTA
ATGTATCTAAATAGTATTTA

Downstream 100 bases:

>100_bases
TTACTATAGATTAAAGTGAATATATTGAAATTTAAGACAGCTGTAATTTATTAATTAGTAGCTGTCTTTGTTAATAAGTT
TTTATATACTTATAATAAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 357; Mature: 357

Protein sequence:

>357_residues
MRRNIMRLEFIDKVKDNEVLGKSILSSDGQMLLRTGIKLTNNYLSKLKDMGVLYIYVEDERLEDINVEDERLIELKQRTI
KSVADISKNIHGYSGKKFKKAISSIENLVDYIIDIGDVNKSLYDIKTHDNYTYLHSLDTCVMTSFLGISLGFKEDELKDL
GIGASLHDIGKTQIPLKILNKKGKLNDEEFAEIKNHTLYGGKLLRNNKQISENVIDIVEQHHERIDGKGYPYKLHGDEIS
KYAKVVSLCDVYDAVSSDRCYRRKFSPNDAYELILGNSETMFDIEVVEKFKETFSIYPLGACVKLSNGVEGYVIHQNRGF
PDRPLIRVLYDSDTREPVQFYEIDLLKHKNLVIKTIV

Sequences:

>Translated_357_residues
MRRNIMRLEFIDKVKDNEVLGKSILSSDGQMLLRTGIKLTNNYLSKLKDMGVLYIYVEDERLEDINVEDERLIELKQRTI
KSVADISKNIHGYSGKKFKKAISSIENLVDYIIDIGDVNKSLYDIKTHDNYTYLHSLDTCVMTSFLGISLGFKEDELKDL
GIGASLHDIGKTQIPLKILNKKGKLNDEEFAEIKNHTLYGGKLLRNNKQISENVIDIVEQHHERIDGKGYPYKLHGDEIS
KYAKVVSLCDVYDAVSSDRCYRRKFSPNDAYELILGNSETMFDIEVVEKFKETFSIYPLGACVKLSNGVEGYVIHQNRGF
PDRPLIRVLYDSDTREPVQFYEIDLLKHKNLVIKTIV
>Mature_357_residues
MRRNIMRLEFIDKVKDNEVLGKSILSSDGQMLLRTGIKLTNNYLSKLKDMGVLYIYVEDERLEDINVEDERLIELKQRTI
KSVADISKNIHGYSGKKFKKAISSIENLVDYIIDIGDVNKSLYDIKTHDNYTYLHSLDTCVMTSFLGISLGFKEDELKDL
GIGASLHDIGKTQIPLKILNKKGKLNDEEFAEIKNHTLYGGKLLRNNKQISENVIDIVEQHHERIDGKGYPYKLHGDEIS
KYAKVVSLCDVYDAVSSDRCYRRKFSPNDAYELILGNSETMFDIEVVEKFKETFSIYPLGACVKLSNGVEGYVIHQNRGF
PDRPLIRVLYDSDTREPVQFYEIDLLKHKNLVIKTIV

Specific function: Positively regulates the synthesis of extracellular enzymes and extracellular polysaccharides. The cell-cell signaling system encoded by rpf genes is required for full virulence and is implicated in regulation of the formation and dispersal of biofilms [H

COG id: COG2206

COG function: function code T; HD-GYP domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR003607
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 41016; Mature: 41016

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRNIMRLEFIDKVKDNEVLGKSILSSDGQMLLRTGIKLTNNYLSKLKDMGVLYIYVEDE
CCCCCHHHHHHHHCCCCHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHCCEEEEEEECC
RLEDINVEDERLIELKQRTIKSVADISKNIHGYSGKKFKKAISSIENLVDYIIDIGDVNK
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
SLYDIKTHDNYTYLHSLDTCVMTSFLGISLGFKEDELKDLGIGASLHDIGKTQIPLKILN
CEEEEECCCCEEEHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCHHHCCCCCCCHHEEC
KKGKLNDEEFAEIKNHTLYGGKLLRNNKQISENVIDIVEQHHERIDGKGYPYKLHGDEIS
CCCCCCHHHHHHHHCCEEECCEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHHH
KYAKVVSLCDVYDAVSSDRCYRRKFSPNDAYELILGNSETMFDIEVVEKFKETFSIYPLG
HHHHHHHHHHHHHHHCCCCHHHCCCCCCCCEEEEECCCCCEEHHHHHHHHHHHHCCCCCC
ACVKLSNGVEGYVIHQNRGFPDRPLIRVLYDSDTREPVQFYEIDLLKHKNLVIKTIV
CEEEECCCCCEEEEECCCCCCCCCEEEEEECCCCCCCHHHEEEEHHHCCCEEEEECC
>Mature Secondary Structure
MRRNIMRLEFIDKVKDNEVLGKSILSSDGQMLLRTGIKLTNNYLSKLKDMGVLYIYVEDE
CCCCCHHHHHHHHCCCCHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHCCEEEEEEECC
RLEDINVEDERLIELKQRTIKSVADISKNIHGYSGKKFKKAISSIENLVDYIIDIGDVNK
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
SLYDIKTHDNYTYLHSLDTCVMTSFLGISLGFKEDELKDLGIGASLHDIGKTQIPLKILN
CEEEEECCCCEEEHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCHHHCCCCCCCHHEEC
KKGKLNDEEFAEIKNHTLYGGKLLRNNKQISENVIDIVEQHHERIDGKGYPYKLHGDEIS
CCCCCCHHHHHHHHCCEEECCEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHHH
KYAKVVSLCDVYDAVSSDRCYRRKFSPNDAYELILGNSETMFDIEVVEKFKETFSIYPLG
HHHHHHHHHHHHHHHCCCCHHHCCCCCCCCEEEEECCCCCEEHHHHHHHHHHHHCCCCCC
ACVKLSNGVEGYVIHQNRGFPDRPLIRVLYDSDTREPVQFYEIDLLKHKNLVIKTIV
CEEEECCCCCEEEEECCCCCCCCCEEEEEECCCCCCCHHHEEEEHHHCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11123673 [H]