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The map label for this gene is yedE [H]

Identifier: 28210151

GI number: 28210151

Start: 390718

End: 391404

Strand: Direct

Name: yedE [H]

Synonym: CTC00397

Alternate gene names: 28210151

Gene position: 390718-391404 (Clockwise)

Preceding gene: 28210150

Following gene: 28210152

Centisome position: 13.96

GC content: 31.59

Gene sequence:

>687_bases
TTGCAAAATGAAATGGATAAATTAATTGAAGAGCGCCAGGGAAAACTAAATAAGAAAAAGAATCAGACACCCCATGGGGT
AATAATTTCTTTTATTATATTAATATTGTGTTGCATACTATTTCCGAACCAGTATAAATATGCTATATGTTTAGGTGCAG
GAGTCATTATTGGAATTATTTTAAGGTACTCACGATTTTGTTTTGCAGCAGCATTTAGAGATCCTTTTATCTCTAGAAAT
ACAGCACTTCTAAGAGGGATGATATTAGCAATGATGGTGAGTACCATTGGTTTTGCTGTGATTCAATCTGGGTATACCTA
CGATAAAGTTATTAATTATGATTTAATTCCAGGAGCTGTTAGTTCTGTAGGAATTCACGTTATGATTGGAGCTTTTATAT
TTGGTATAGGAATGGTTTTTGCAGGTGGATGTGCTTCAGGGGTATTAATGAGAATCGGTGAAGGACATGCATTACATTTA
GTTGTTCTCCTAGGTTTTATAATTGGAACTTTATTAGGAGCAAGAGATTATTCTTTTTGGTATCATCGATTTATCAAAAA
TGCAAAGACTATTTATTTCTCTGAATATATGGATTTGAAGTATGTTGTTTTTACCCAAATAATAGTATTAATAATTTTAT
ATAGACTAGCTCTATGGTATGAAAATAAGTCGCAGGAAGATATATAA

Upstream 100 bases:

>100_bases
ATTGAGGGTTTTACCTTTATCTGTAATTGATTTATTAAAGATTTATAGTATATAATTATGAATACAAAATATAGATTTAA
TTTAGAGGAATGATATTATA

Downstream 100 bases:

>100_bases
TGGGGGAGTTTACATGGCAGTAAGAAAACTAAATTGTTTAAGTGAAGTATGTCCTATTCCCATACTTCGTGCAATAAAAG
AATTTAAAACAATGGAAGCA

Product: putative permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MQNEMDKLIEERQGKLNKKKNQTPHGVIISFIILILCCILFPNQYKYAICLGAGVIIGIILRYSRFCFAAAFRDPFISRN
TALLRGMILAMMVSTIGFAVIQSGYTYDKVINYDLIPGAVSSVGIHVMIGAFIFGIGMVFAGGCASGVLMRIGEGHALHL
VVLLGFIIGTLLGARDYSFWYHRFIKNAKTIYFSEYMDLKYVVFTQIIVLIILYRLALWYENKSQEDI

Sequences:

>Translated_228_residues
MQNEMDKLIEERQGKLNKKKNQTPHGVIISFIILILCCILFPNQYKYAICLGAGVIIGIILRYSRFCFAAAFRDPFISRN
TALLRGMILAMMVSTIGFAVIQSGYTYDKVINYDLIPGAVSSVGIHVMIGAFIFGIGMVFAGGCASGVLMRIGEGHALHL
VVLLGFIIGTLLGARDYSFWYHRFIKNAKTIYFSEYMDLKYVVFTQIIVLIILYRLALWYENKSQEDI
>Mature_228_residues
MQNEMDKLIEERQGKLNKKKNQTPHGVIISFIILILCCILFPNQYKYAICLGAGVIIGIILRYSRFCFAAAFRDPFISRN
TALLRGMILAMMVSTIGFAVIQSGYTYDKVINYDLIPGAVSSVGIHVMIGAFIFGIGMVFAGGCASGVLMRIGEGHALHL
VVLLGFIIGTLLGARDYSFWYHRFIKNAKTIYFSEYMDLKYVVFTQIIVLIILYRLALWYENKSQEDI

Specific function: Unknown

COG id: COG2391

COG function: function code R; Predicted transporter component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0394 family [H]

Homologues:

Organism=Escherichia coli, GI1788238, Length=161, Percent_Identity=30.4347826086957, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1788323, Length=103, Percent_Identity=37.8640776699029, Blast_Score=71, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007272 [H]

Pfam domain/function: PF04143 DUF395 [H]

EC number: NA

Molecular weight: Translated: 25693; Mature: 25693

Theoretical pI: Translated: 9.26; Mature: 9.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNEMDKLIEERQGKLNKKKNQTPHGVIISFIILILCCILFPNQYKYAICLGAGVIIGII
CCCHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
LRYSRFCFAAAFRDPFISRNTALLRGMILAMMVSTIGFAVIQSGYTYDKVINYDLIPGAV
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCHH
SSVGIHVMIGAFIFGIGMVFAGGCASGVLMRIGEGHALHLVVLLGFIIGTLLGARDYSFW
HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHH
YHRFIKNAKTIYFSEYMDLKYVVFTQIIVLIILYRLALWYENKSQEDI
HHHHHHCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MQNEMDKLIEERQGKLNKKKNQTPHGVIISFIILILCCILFPNQYKYAICLGAGVIIGII
CCCHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
LRYSRFCFAAAFRDPFISRNTALLRGMILAMMVSTIGFAVIQSGYTYDKVINYDLIPGAV
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCHH
SSVGIHVMIGAFIFGIGMVFAGGCASGVLMRIGEGHALHLVVLLGFIIGTLLGARDYSFW
HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHH
YHRFIKNAKTIYFSEYMDLKYVVFTQIIVLIILYRLALWYENKSQEDI
HHHHHHCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8371104; 9097040; 9278503 [H]