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The map label for this gene is yrrC [H]

Identifier: 28210082

GI number: 28210082

Start: 304873

End: 307104

Strand: Direct

Name: yrrC [H]

Synonym: CTC00322

Alternate gene names: 28210082

Gene position: 304873-307104 (Clockwise)

Preceding gene: 28210081

Following gene: 28210083

Centisome position: 10.89

GC content: 29.66

Gene sequence:

>2232_bases
ATGGAGGAAATACAAGGTACCGTTGATTCCATAATATTTAGGAATGATGAAAATGGGTATGTAGTTAGCAGAATTAAGGA
AGATGCTAAGGCTATAACAACTATAGTAGGATGCATACCTTATATATCAGAGGGTCAAAACCTAAAATTACAGGGGGGAT
GGGTTATACACCCTCAGTTTGGTCGACAGTTTAAAGTTGAAAGCTGTGAGGAAATTATTCCGGATACTAAAAAAGGTATT
GAAAGATATTTGGCTTCAGGAGTAATTTCTGGAATAGGACCGGTAACAGCTAAAAAGATTGTTAAGGAATTTGGACTAGA
AACCTTTGATATTTTAGAAAATGATATTGAAAGATTGAAAGAAATAGATGGAATAGGCGATAAAAAAATAAATATAATTC
AAGAAGCTTACAAAGATCAAAAAGAAGTTAGAAATATAATGATGTTTTTTCAAGAGTATGGAATATCTATAAACCATTGT
CTTAAAATATATAAAAAATTTAAAGGGGAATCCATTAAAATAGTAAAAGAAAATCCATATGTATTAACGGAAAATATTGC
AGGTATAGGATTTAAAACAGCAGATAAAATAGCTAGAAATTTAGGAGTTGATGTAGATTCTCCTTTTAGAATACAAAGTG
GTGTAAACTATGCAGTTAATCAATTTTCTGCATTGGGAAATACTTGTATGCCAATAGATAAACTAATAAAAGAAGGAAAA
GAAATATTAAATGTAAAAGAGGAAGATATTAAAGAAAACATATTGCAAAATGCCTTTCAAGGTAAATTAAGGGTGGAGAT
AGTGGATGGTAAAGAATATGTTTTCTCTATACCTTACTACTATTGTGAACTAGGAGTAACTAAGAACATATTAAAGCTAT
CCTTATATAACCATAAAGATTTAGATATGACTGTAGAGGAAGAGATAAAAAAATTTGAAGAAAATAATAATATAGAATTT
TCTCCTTCGCAAAGAGAAGCTATAATGGGAGCGTTTTTAAATGGAGTGGAAATAATAACAGGTGGACCTGGAACAGGTAA
AACAACTATAATAAACTGTATTTCTGAGATATATGAAAATTATGGATATACGGTTTGTATGGGGGCCCCTACAGGAAGGG
CTGCCAAAAGAATGACTGAAGCTACTGGAAGGGATGCAAAAACTATACACAGATTATTGGAAATGGGAGTAGGAGAAGAA
GAAGTATTTTCTAAAACAGAAGAAACACCATTAGAATGTGATGTGGTAATAATAGATGAGGCTTCAATGATAGATATAAT
GCTTATGAACAATCTATTAAAAGCTATATCTATAGGAACTAGACTTATAATAGTGGGAGATGTAGATCAGTTGCCATCAG
TAGGGCCTGGAAATGTATTAAGGGATTTAATAGAGAGTAATTGTGTTAAGATAGTTAGGTTAAAAGACATATTTAGACAA
TCAGAAACTAGTGCAATAACTGTAAATGCTCATAAGATAAATAATGGACAAATGCCTGTTTTAAACGAAAGAGAAAAAGA
CTTCTTTTTTTTAAAAGGTGACTCCAATGAAGATATATTAGATGTTTTATTAGCACTAGTTCATAAAAGATTACCAAATT
TTAATAAAGACTGGGATAAATTAAAACATATACAAATATTGAGTCCTATGAGAAAAGGACTATTAGGAGTTGAAAATTTA
AATAAAAATCTTCAAATGGTGTTAAATCCCCCATCAAAAGATAAAAAGGAGAGAAAATTTAAGGAGTACATATTTAGAGT
AGGGGATAAGATAATGCAAACTAAGAATAATTATAATATTAAATGGAAGAAGATAGACAAATATAATAGAGAAGAAGGAT
TGGGAATATTCAATGGAGATATAGGATATATAGAGGATATAGACGAAGAAAATAATAATATGACCATTATTTTTGATGAA
GAAAAGAGAGTAATTTATGAAGATATTTTTTTAGATGAAATAGATTTAGCATATGCCATAACTATACATAAAAGTCAAGG
TAGTGAGTTTCCAGCAGTTATTATACCTACCTTCATGGGACCACCTATGCTTATGAATAGAAATTTACTGTATACAGGAA
TAACAAGAGCAAAGGAATTAGTAGTTGTAGTAGGAGAATTAAAGGCATTAAAATTTATGGTAGATAATAATAGAAGCTTT
GAAAGGTATTCTTTATTAAAGTGGAGAATACAAAACATATTAGAAAATTTTTATGAAAATGATGAACAATAG

Upstream 100 bases:

>100_bases
TAGAAAATATAATATATGATATAATATATAAAAAGTGCTATGAACTTTTTTATATTCAATTAATAGGTGATAGTGAATAA
CTAAAAATAGGAGAGATCTT

Downstream 100 bases:

>100_bases
CCTGGAGGTTTATATGTTTATTAAAATGGAGAAAAAAAATCATTGGCGTTTAGAGAAAATAAGTAATTATTTAAAAACAT
GGATATTTTCAAAGGAAAAA

Product: exodeoxyribonuclease V alpha chain

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 743; Mature: 743

Protein sequence:

>743_residues
MEEIQGTVDSIIFRNDENGYVVSRIKEDAKAITTIVGCIPYISEGQNLKLQGGWVIHPQFGRQFKVESCEEIIPDTKKGI
ERYLASGVISGIGPVTAKKIVKEFGLETFDILENDIERLKEIDGIGDKKINIIQEAYKDQKEVRNIMMFFQEYGISINHC
LKIYKKFKGESIKIVKENPYVLTENIAGIGFKTADKIARNLGVDVDSPFRIQSGVNYAVNQFSALGNTCMPIDKLIKEGK
EILNVKEEDIKENILQNAFQGKLRVEIVDGKEYVFSIPYYYCELGVTKNILKLSLYNHKDLDMTVEEEIKKFEENNNIEF
SPSQREAIMGAFLNGVEIITGGPGTGKTTIINCISEIYENYGYTVCMGAPTGRAAKRMTEATGRDAKTIHRLLEMGVGEE
EVFSKTEETPLECDVVIIDEASMIDIMLMNNLLKAISIGTRLIIVGDVDQLPSVGPGNVLRDLIESNCVKIVRLKDIFRQ
SETSAITVNAHKINNGQMPVLNEREKDFFFLKGDSNEDILDVLLALVHKRLPNFNKDWDKLKHIQILSPMRKGLLGVENL
NKNLQMVLNPPSKDKKERKFKEYIFRVGDKIMQTKNNYNIKWKKIDKYNREEGLGIFNGDIGYIEDIDEENNNMTIIFDE
EKRVIYEDIFLDEIDLAYAITIHKSQGSEFPAVIIPTFMGPPMLMNRNLLYTGITRAKELVVVVGELKALKFMVDNNRSF
ERYSLLKWRIQNILENFYENDEQ

Sequences:

>Translated_743_residues
MEEIQGTVDSIIFRNDENGYVVSRIKEDAKAITTIVGCIPYISEGQNLKLQGGWVIHPQFGRQFKVESCEEIIPDTKKGI
ERYLASGVISGIGPVTAKKIVKEFGLETFDILENDIERLKEIDGIGDKKINIIQEAYKDQKEVRNIMMFFQEYGISINHC
LKIYKKFKGESIKIVKENPYVLTENIAGIGFKTADKIARNLGVDVDSPFRIQSGVNYAVNQFSALGNTCMPIDKLIKEGK
EILNVKEEDIKENILQNAFQGKLRVEIVDGKEYVFSIPYYYCELGVTKNILKLSLYNHKDLDMTVEEEIKKFEENNNIEF
SPSQREAIMGAFLNGVEIITGGPGTGKTTIINCISEIYENYGYTVCMGAPTGRAAKRMTEATGRDAKTIHRLLEMGVGEE
EVFSKTEETPLECDVVIIDEASMIDIMLMNNLLKAISIGTRLIIVGDVDQLPSVGPGNVLRDLIESNCVKIVRLKDIFRQ
SETSAITVNAHKINNGQMPVLNEREKDFFFLKGDSNEDILDVLLALVHKRLPNFNKDWDKLKHIQILSPMRKGLLGVENL
NKNLQMVLNPPSKDKKERKFKEYIFRVGDKIMQTKNNYNIKWKKIDKYNREEGLGIFNGDIGYIEDIDEENNNMTIIFDE
EKRVIYEDIFLDEIDLAYAITIHKSQGSEFPAVIIPTFMGPPMLMNRNLLYTGITRAKELVVVVGELKALKFMVDNNRSF
ERYSLLKWRIQNILENFYENDEQ
>Mature_743_residues
MEEIQGTVDSIIFRNDENGYVVSRIKEDAKAITTIVGCIPYISEGQNLKLQGGWVIHPQFGRQFKVESCEEIIPDTKKGI
ERYLASGVISGIGPVTAKKIVKEFGLETFDILENDIERLKEIDGIGDKKINIIQEAYKDQKEVRNIMMFFQEYGISINHC
LKIYKKFKGESIKIVKENPYVLTENIAGIGFKTADKIARNLGVDVDSPFRIQSGVNYAVNQFSALGNTCMPIDKLIKEGK
EILNVKEEDIKENILQNAFQGKLRVEIVDGKEYVFSIPYYYCELGVTKNILKLSLYNHKDLDMTVEEEIKKFEENNNIEF
SPSQREAIMGAFLNGVEIITGGPGTGKTTIINCISEIYENYGYTVCMGAPTGRAAKRMTEATGRDAKTIHRLLEMGVGEE
EVFSKTEETPLECDVVIIDEASMIDIMLMNNLLKAISIGTRLIIVGDVDQLPSVGPGNVLRDLIESNCVKIVRLKDIFRQ
SETSAITVNAHKINNGQMPVLNEREKDFFFLKGDSNEDILDVLLALVHKRLPNFNKDWDKLKHIQILSPMRKGLLGVENL
NKNLQMVLNPPSKDKKERKFKEYIFRVGDKIMQTKNNYNIKWKKIDKYNREEGLGIFNGDIGYIEDIDEENNNMTIIFDE
EKRVIYEDIFLDEIDLAYAITIHKSQGSEFPAVIIPTFMGPPMLMNRNLLYTGITRAKELVVVVGELKALKFMVDNNRSF
ERYSLLKWRIQNILENFYENDEQ

Specific function: Exhibits Several Catalytic Activities, Including ATP-Dependent Exonuclease, ATP-Stimulated Endonuclease, ATP-Dependent Unwinding And DNA-Dependent ATPase Activities. Strand Cleavage Occurs 5' To 3' During The Unwinding Of Duplex DNA At Chi Sequences, Whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789182, Length=399, Percent_Identity=27.5689223057644, Blast_Score=120, Evalue=4e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR006345 [H]

Pfam domain/function: NA

EC number: 3.1.11.5

Molecular weight: Translated: 84695; Mature: 84695

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEEIQGTVDSIIFRNDENGYVVSRIKEDAKAITTIVGCIPYISEGQNLKLQGGWVIHPQF
CCCHHCCHHHEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEEECCCC
GRQFKVESCEEIIPDTKKGIERYLASGVISGIGPVTAKKIVKEFGLETFDILENDIERLK
CCCCCHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
EIDGIGDKKINIIQEAYKDQKEVRNIMMFFQEYGISINHCLKIYKKFKGESIKIVKENPY
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEEECCCE
VLTENIAGIGFKTADKIARNLGVDVDSPFRIQSGVNYAVNQFSALGNTCMPIDKLIKEGK
EEECCCCCCCCHHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHHCCCCCCCHHHHHHCCH
EILNVKEEDIKENILQNAFQGKLRVEIVDGKEYVFSIPYYYCELGVTKNILKLSLYNHKD
HHHCCCHHHHHHHHHHHHHCCCEEEEEECCCEEEEECCHHEEECCCCCCCCEEEECCCCC
LDMTVEEEIKKFEENNNIEFSPSQREAIMGAFLNGVEIITGGPGTGKTTIINCISEIYEN
CCCCHHHHHHHHHCCCCEEECCCHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHC
YGYTVCMGAPTGRAAKRMTEATGRDAKTIHRLLEMGVGEEEVFSKTEETPLECDVVIIDE
CCEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEEEECC
ASMIDIMLMNNLLKAISIGTRLIIVGDVDQLPSVGPGNVLRDLIESNCVKIVRLKDIFRQ
CHHHHHHHHHHHHHHHHCCCEEEEEECHHHCCCCCCHHHHHHHHHHCHHHHHHHHHHHHC
SETSAITVNAHKINNGQMPVLNEREKDFFFLKGDSNEDILDVLLALVHKRLPNFNKDWDK
CCCCEEEEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCHHH
LKHIQILSPMRKGLLGVENLNKNLQMVLNPPSKDKKERKFKEYIFRVGDKIMQTKNNYNI
HHHHHHHHHHHHCCCCHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCE
KWKKIDKYNREEGLGIFNGDIGYIEDIDEENNNMTIIFDEEKRVIYEDIFLDEIDLAYAI
EEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEEECCCCEEHHHHHHCCCCEEEEE
TIHKSQGSEFPAVIIPTFMGPPMLMNRNLLYTGITRAKELVVVVGELKALKFMVDNNRSF
EEECCCCCCCCEEEEECCCCCCHHHCCCEEEECHHHHHHHEEEEECHHEEEEEECCCCCH
ERYSLLKWRIQNILENFYENDEQ
HHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MEEIQGTVDSIIFRNDENGYVVSRIKEDAKAITTIVGCIPYISEGQNLKLQGGWVIHPQF
CCCHHCCHHHEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEEECCCC
GRQFKVESCEEIIPDTKKGIERYLASGVISGIGPVTAKKIVKEFGLETFDILENDIERLK
CCCCCHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
EIDGIGDKKINIIQEAYKDQKEVRNIMMFFQEYGISINHCLKIYKKFKGESIKIVKENPY
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEEECCCE
VLTENIAGIGFKTADKIARNLGVDVDSPFRIQSGVNYAVNQFSALGNTCMPIDKLIKEGK
EEECCCCCCCCHHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHHCCCCCCCHHHHHHCCH
EILNVKEEDIKENILQNAFQGKLRVEIVDGKEYVFSIPYYYCELGVTKNILKLSLYNHKD
HHHCCCHHHHHHHHHHHHHCCCEEEEEECCCEEEEECCHHEEECCCCCCCCEEEECCCCC
LDMTVEEEIKKFEENNNIEFSPSQREAIMGAFLNGVEIITGGPGTGKTTIINCISEIYEN
CCCCHHHHHHHHHCCCCEEECCCHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHC
YGYTVCMGAPTGRAAKRMTEATGRDAKTIHRLLEMGVGEEEVFSKTEETPLECDVVIIDE
CCEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEEEECC
ASMIDIMLMNNLLKAISIGTRLIIVGDVDQLPSVGPGNVLRDLIESNCVKIVRLKDIFRQ
CHHHHHHHHHHHHHHHHCCCEEEEEECHHHCCCCCCHHHHHHHHHHCHHHHHHHHHHHHC
SETSAITVNAHKINNGQMPVLNEREKDFFFLKGDSNEDILDVLLALVHKRLPNFNKDWDK
CCCCEEEEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCHHH
LKHIQILSPMRKGLLGVENLNKNLQMVLNPPSKDKKERKFKEYIFRVGDKIMQTKNNYNI
HHHHHHHHHHHHCCCCHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCE
KWKKIDKYNREEGLGIFNGDIGYIEDIDEENNNMTIIFDEEKRVIYEDIFLDEIDLAYAI
EEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEEECCCCEEHHHHHHCCCCEEEEE
TIHKSQGSEFPAVIIPTFMGPPMLMNRNLLYTGITRAKELVVVVGELKALKFMVDNNRSF
EEECCCCCCCCEEEEECCCCCCHHHCCCEEEECHHHHHHHEEEEECHHEEEEEECCCCCH
ERYSLLKWRIQNILENFYENDEQ
HHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: DNA-dependent ATPase activity; Phosphoric ester hydrolysis [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]