Click here to switch to the map view.

The map label for this gene is pilC [H]

Identifier: 77747718

GI number: 77747718

Start: 2255112

End: 2256314

Strand: Reverse

Name: pilC [H]

Synonym: PD1923

Alternate gene names: 77747718

Gene position: 2256314-2255112 (Counterclockwise)

Preceding gene: 28199792

Following gene: 28199789

Centisome position: 89.54

GC content: 49.54

Gene sequence:

>1203_bases
TTGACTTCGTTTCTTTGGGAAGGGACGGATAAGCGCGGTGTCAAAATCAAGGGGGAACAGACAGCACGCACGGCGAACTT
GTTGCGTGCTGAGCTACGTCGTCAAGGCATCACGCCTCTTGTGGTTAAGCCTAGGCCTAAGCCGCTGTTTGGTCAGGCAG
GGAAGCGGATCACTCCGAAGGACATTGCCTTTTTTAGTCGCCAGATGGCGACGATGATGAAAGCCGGTGTCCCCATTGTC
GGGGCGTTGGATATTTTGGCCAACGGTCAGAAGAATCCGCGTATGCGTACGATGGTCAATCAAATTAAAAATGATATTGA
AGGCGGCTCCTCGCTGTATGAGTCAATCAGCAAGCACCCTGTATATTTCGATGAGCTTTATCGCAATCTGGTCAGGGCTG
GTGAGCGCGCGGGCGTGCTGGAGACGGTGCTTGATACGGTTGCTAGTTATAAGGAGAACATTGAGGCTCTGAAGGGAAAA
ATTCGCAAGGCGTTGTTTTATCCTGTTGCTATTGTCGCGGTTGCTCTCATTGTTAGTTCGATTTTATTGATATACGTGGT
GCCGCAGTTCGAGGATGTGTTCAAAGGATTCGGAGCGGAATTGCCTGCATTCACTCAGATGATTGTCAATTTTTCCAACT
TTATGCAGCGGTGGTGGTGGGCCATGTTGGCTCTGCTGATTGTTGTTATCGGTGGTGGTTTGTTTACTTACAAGCGCTCT
GAATCCATGCAACATCTGTTGGATAGGTTGGTGTTGAAGTTCCCGGTGATCGGGGCAATTATGCACAATAGCGCGCTTGC
TCGGTTCTCGCGAACAACAGCTGTTACTTTCCGTGCAGGGGTGCCACTGGTAGAGGCATTGGGTATCGTTGCTGGGGCAA
CCGGCAATAAGGTTTATTCGGATGCTGTGTTCCGCATGCGTGATGATGTTTCAGTTGGCTATTCTATAAATATGTCAATG
AGGCAAGTTGGTATCTTCCCTCATATGGTGGTGCAGATGGCTTCCATCGGTGAGGAAGCCGGTGCTCTGGACGCGATGCT
GTTTAAAGTCGCTGAGTACTATGAACAGGAAGTCAGTAACGCGGTCGATGGACTCAGCAGTTTGCTGGAACCGCTGATCA
TGGTCTTTATTGGTGTTATCGTCGGCGGCATGGTCATTGCTATGTATTTGCCGATCTTTAAGCTTGCTTCTGTCGTTGGA
TAA

Upstream 100 bases:

>100_bases
GTCATCGGTCCGCTTGGGGACGGTGGATGGGAGAACAGCATTGATATTTGCAACACGTACTGCGGTAAATGCTTCGCGTG
CTGGGAATACCAGCCCGCCG

Downstream 100 bases:

>100_bases
AACGTTATGGCATTTCTTGATCAGCACCCCGGACTCGGCTATCCCCTTGCGTCCGGTTTGGGGTTGTTGCTTGGTAGTTT
TCTCAATGTGGTGATCCTGC

Product: fimbrial assembly protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 400; Mature: 399

Protein sequence:

>400_residues
MTSFLWEGTDKRGVKIKGEQTARTANLLRAELRRQGITPLVVKPRPKPLFGQAGKRITPKDIAFFSRQMATMMKAGVPIV
GALDILANGQKNPRMRTMVNQIKNDIEGGSSLYESISKHPVYFDELYRNLVRAGERAGVLETVLDTVASYKENIEALKGK
IRKALFYPVAIVAVALIVSSILLIYVVPQFEDVFKGFGAELPAFTQMIVNFSNFMQRWWWAMLALLIVVIGGGLFTYKRS
ESMQHLLDRLVLKFPVIGAIMHNSALARFSRTTAVTFRAGVPLVEALGIVAGATGNKVYSDAVFRMRDDVSVGYSINMSM
RQVGIFPHMVVQMASIGEEAGALDAMLFKVAEYYEQEVSNAVDGLSSLLEPLIMVFIGVIVGGMVIAMYLPIFKLASVVG

Sequences:

>Translated_400_residues
MTSFLWEGTDKRGVKIKGEQTARTANLLRAELRRQGITPLVVKPRPKPLFGQAGKRITPKDIAFFSRQMATMMKAGVPIV
GALDILANGQKNPRMRTMVNQIKNDIEGGSSLYESISKHPVYFDELYRNLVRAGERAGVLETVLDTVASYKENIEALKGK
IRKALFYPVAIVAVALIVSSILLIYVVPQFEDVFKGFGAELPAFTQMIVNFSNFMQRWWWAMLALLIVVIGGGLFTYKRS
ESMQHLLDRLVLKFPVIGAIMHNSALARFSRTTAVTFRAGVPLVEALGIVAGATGNKVYSDAVFRMRDDVSVGYSINMSM
RQVGIFPHMVVQMASIGEEAGALDAMLFKVAEYYEQEVSNAVDGLSSLLEPLIMVFIGVIVGGMVIAMYLPIFKLASVVG
>Mature_399_residues
TSFLWEGTDKRGVKIKGEQTARTANLLRAELRRQGITPLVVKPRPKPLFGQAGKRITPKDIAFFSRQMATMMKAGVPIVG
ALDILANGQKNPRMRTMVNQIKNDIEGGSSLYESISKHPVYFDELYRNLVRAGERAGVLETVLDTVASYKENIEALKGKI
RKALFYPVAIVAVALIVSSILLIYVVPQFEDVFKGFGAELPAFTQMIVNFSNFMQRWWWAMLALLIVVIGGGLFTYKRSE
SMQHLLDRLVLKFPVIGAIMHNSALARFSRTTAVTFRAGVPLVEALGIVAGATGNKVYSDAVFRMRDDVSVGYSINMSMR
QVGIFPHMVVQMASIGEEAGALDAMLFKVAEYYEQEVSNAVDGLSSLLEPLIMVFIGVIVGGMVIAMYLPIFKLASVVG

Specific function: Involved in the translocation of the type IV pilin (pilA) [H]

COG id: COG1459

COG function: function code NU; Type II secretory pathway, component PulF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP F family [H]

Homologues:

Organism=Escherichia coli, GI1789724, Length=398, Percent_Identity=28.1407035175879, Blast_Score=197, Evalue=7e-52,
Organism=Escherichia coli, GI1786295, Length=395, Percent_Identity=27.5949367088608, Blast_Score=161, Evalue=8e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003004
- InterPro:   IPR018076
- InterPro:   IPR001992 [H]

Pfam domain/function: PF00482 GSPII_F [H]

EC number: NA

Molecular weight: Translated: 44099; Mature: 43968

Theoretical pI: Translated: 10.13; Mature: 10.13

Prosite motif: PS00874 T2SP_F

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSFLWEGTDKRGVKIKGEQTARTANLLRAELRRQGITPLVVKPRPKPLFGQAGKRITPK
CCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCHH
DIAFFSRQMATMMKAGVPIVGALDILANGQKNPRMRTMVNQIKNDIEGGSSLYESISKHP
HHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCC
VYFDELYRNLVRAGERAGVLETVLDTVASYKENIEALKGKIRKALFYPVAIVAVALIVSS
CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILLIYVVPQFEDVFKGFGAELPAFTQMIVNFSNFMQRWWWAMLALLIVVIGGGLFTYKRS
HHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
ESMQHLLDRLVLKFPVIGAIMHNSALARFSRTTAVTFRAGVPLVEALGIVAGATGNKVYS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHCCCCCHHHH
DAVFRMRDDVSVGYSINMSMRQVGIFPHMVVQMASIGEEAGALDAMLFKVAEYYEQEVSN
HHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
AVDGLSSLLEPLIMVFIGVIVGGMVIAMYLPIFKLASVVG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TSFLWEGTDKRGVKIKGEQTARTANLLRAELRRQGITPLVVKPRPKPLFGQAGKRITPK
CCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCHH
DIAFFSRQMATMMKAGVPIVGALDILANGQKNPRMRTMVNQIKNDIEGGSSLYESISKHP
HHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCC
VYFDELYRNLVRAGERAGVLETVLDTVASYKENIEALKGKIRKALFYPVAIVAVALIVSS
CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILLIYVVPQFEDVFKGFGAELPAFTQMIVNFSNFMQRWWWAMLALLIVVIGGGLFTYKRS
HHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
ESMQHLLDRLVLKFPVIGAIMHNSALARFSRTTAVTFRAGVPLVEALGIVAGATGNKVYS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHCCCCCHHHH
DAVFRMRDDVSVGYSINMSMRQVGIFPHMVVQMASIGEEAGALDAMLFKVAEYYEQEVSN
HHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
AVDGLSSLLEPLIMVFIGVIVGGMVIAMYLPIFKLASVVG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1971619; 10984043 [H]