| Definition | Xylella fastidiosa Temecula1, complete genome. |
|---|---|
| Accession | NC_004556 |
| Length | 2,519,802 |
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The map label for this gene is pkn1 [H]
Identifier: 77747717
GI number: 77747717
Start: 2232409
End: 2234019
Strand: Reverse
Name: pkn1 [H]
Synonym: PD1903
Alternate gene names: 77747717
Gene position: 2234019-2232409 (Counterclockwise)
Preceding gene: 28199774
Following gene: 77747716
Centisome position: 88.66
GC content: 58.66
Gene sequence:
>1611_bases TTGGCTGAAGATCGACTGTACCGCAGCCCTGACGATGCGATTCCGCTGTATTTGGCATTGCGTGCCCGCAGTGACGGCCG TGACCGTGTGGCTGAAGAAGGGCTGCGCCGTGCCTTGCTGCGTTTGCTGGTCCTGGCGGATGGCTTATTGCTGCAACCGC AGGCACAGGAAGAAGCATTGGAACAAGCGGGCGATGTCACCATGGTGGCCTTGTCGCTGGCACCGCAGGATCCGCGAGTG CATCGTTTGCAAAGTCGCGTTGAGACTGCACAACGTGTACTGGCCTTCAATCTTGCTGGTGAGGACGATTTGCGTGCTGG AACGTTAGGCGAGAGTAGTCGCAGTGCATTGGATCACTTCCGCGATGCATTGGGCTTGGATCCGGACAATGCGCGTGCCC GTCAAGGCTTGGCGGCAGTGGAGAGCGCGATGATCCGCTACGCAGAACAAGCGGCTGAGACCACTCATTTCGACAGTGCC ACATACTGGCTTGATGTTGCATCCACGGTGCGCGAACAAGCACCTACGGTGATCGACGCGCGTAGGCGCATCGCTATCTT GCGTATAGAAAAAATTGCCGCATTGCGGGATGCCGTATTGCGTGCAATTTCTGACCCAAAGAAATTAAAGAGCGCGCATG CCCTCTTTACGGAGATTGTCCGTATTGCTGCTCCTGGTGATGCGGTGATTAGCGAGTTGCGGGAGCGCATCAATCGCGCA ACCCATTATGGGAGCTTCCGCCGAGGACAAGTGTTTACCGATGCGATGCAAGACGGTACTCGAGGTCCCCAGATGCTGGT GGTCCCCCACGGCAGCTTTCAGATGGGCGCAACCGATACCGAAGTAGGTGCCTCAGCGGCGGAACGACCGCAACACCATG TCCGTTTTGAACGCGGTTTTGCGATGTCGATTACTGAAGTCACCGTCGCTCAGTTCCGGCGCTTTGTTGAGCAGACAGGT TACCGACCGCGAGCAACCCGGCGAGGGCATTCACTGGTGTATGACGAACGCAGTGGGAACTTTGTGCGGCGCAGCGGCGT AGATTGGCAGTCTGGTTACGATGGCCGCGCGGCTGCTCCCAACGATCCAGTGATGCATGTCAGCGTGCGCGATGCAGAGG CGTATGCGGCATGGATGTCGCGTCAAACCGGGCGTTATTACCGCCTCCCAAGTGAAGCTGAGTTTGAGTACGCCCTGCGT GCCGGCCGACAAGGCTACTACCCTTGGGGCAACGCCGCCGTCCCAGTGACCGGAAACTATACTGGCGGCAACGATGTCTC TCCGAGTGGACGGCGTTGGGCCAATGCCTTTATCGGTTATGGGGATCGCTACTGGGCTGTGGCCCCTGTAGCTAGTTTCC GCGCCAATGCCTGGGGCCTTCACGACATGGGCGGCAACTTGAGTGAATGGGTAGCCGATTGCTGGCACTCCAGTTATCGG CGTGCCCCAGCCGATGGTGTCGCCTGGTACAACCCAGGCTGCCGTCAGCGTTTGGTACGTGGCGGCAGCTGGGCCAACTC ACCACAGCAGACCCGTGCAGCGTGGCGTGGATCACAGGATTCAGAGATGACCAGCGCCAGGATTGGTTTCCGTCTCGTTC GTGGCATATAA
Upstream 100 bases:
>100_bases CACCAAAAAATCCGCCCCGACACGCGCGCTTTGGCAATCCCCACCGGTTGTATTAGGTGACATGACTTCCGTGCAGGTCA GGCGGCGTGCTGCGCAGGCA
Downstream 100 bases:
>100_bases CGTGCAGCTCTTTAGGGTAGAGGATCGTCACGGCGGGTGCTTGTCATGACGTCTTCCTCATAACATTCGGCGAAGACTGT TTCGGCGAGGACTGTATGAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 536; Mature: 535
Protein sequence:
>536_residues MAEDRLYRSPDDAIPLYLALRARSDGRDRVAEEGLRRALLRLLVLADGLLLQPQAQEEALEQAGDVTMVALSLAPQDPRV HRLQSRVETAQRVLAFNLAGEDDLRAGTLGESSRSALDHFRDALGLDPDNARARQGLAAVESAMIRYAEQAAETTHFDSA TYWLDVASTVREQAPTVIDARRRIAILRIEKIAALRDAVLRAISDPKKLKSAHALFTEIVRIAAPGDAVISELRERINRA THYGSFRRGQVFTDAMQDGTRGPQMLVVPHGSFQMGATDTEVGASAAERPQHHVRFERGFAMSITEVTVAQFRRFVEQTG YRPRATRRGHSLVYDERSGNFVRRSGVDWQSGYDGRAAAPNDPVMHVSVRDAEAYAAWMSRQTGRYYRLPSEAEFEYALR AGRQGYYPWGNAAVPVTGNYTGGNDVSPSGRRWANAFIGYGDRYWAVAPVASFRANAWGLHDMGGNLSEWVADCWHSSYR RAPADGVAWYNPGCRQRLVRGGSWANSPQQTRAAWRGSQDSEMTSARIGFRLVRGI
Sequences:
>Translated_536_residues MAEDRLYRSPDDAIPLYLALRARSDGRDRVAEEGLRRALLRLLVLADGLLLQPQAQEEALEQAGDVTMVALSLAPQDPRV HRLQSRVETAQRVLAFNLAGEDDLRAGTLGESSRSALDHFRDALGLDPDNARARQGLAAVESAMIRYAEQAAETTHFDSA TYWLDVASTVREQAPTVIDARRRIAILRIEKIAALRDAVLRAISDPKKLKSAHALFTEIVRIAAPGDAVISELRERINRA THYGSFRRGQVFTDAMQDGTRGPQMLVVPHGSFQMGATDTEVGASAAERPQHHVRFERGFAMSITEVTVAQFRRFVEQTG YRPRATRRGHSLVYDERSGNFVRRSGVDWQSGYDGRAAAPNDPVMHVSVRDAEAYAAWMSRQTGRYYRLPSEAEFEYALR AGRQGYYPWGNAAVPVTGNYTGGNDVSPSGRRWANAFIGYGDRYWAVAPVASFRANAWGLHDMGGNLSEWVADCWHSSYR RAPADGVAWYNPGCRQRLVRGGSWANSPQQTRAAWRGSQDSEMTSARIGFRLVRGI >Mature_535_residues AEDRLYRSPDDAIPLYLALRARSDGRDRVAEEGLRRALLRLLVLADGLLLQPQAQEEALEQAGDVTMVALSLAPQDPRVH RLQSRVETAQRVLAFNLAGEDDLRAGTLGESSRSALDHFRDALGLDPDNARARQGLAAVESAMIRYAEQAAETTHFDSAT YWLDVASTVREQAPTVIDARRRIAILRIEKIAALRDAVLRAISDPKKLKSAHALFTEIVRIAAPGDAVISELRERINRAT HYGSFRRGQVFTDAMQDGTRGPQMLVVPHGSFQMGATDTEVGASAAERPQHHVRFERGFAMSITEVTVAQFRRFVEQTGY RPRATRRGHSLVYDERSGNFVRRSGVDWQSGYDGRAAAPNDPVMHVSVRDAEAYAAWMSRQTGRYYRLPSEAEFEYALRA GRQGYYPWGNAAVPVTGNYTGGNDVSPSGRRWANAFIGYGDRYWAVAPVASFRANAWGLHDMGGNLSEWVADCWHSSYRR APADGVAWYNPGCRQRLVRGGSWANSPQQTRAAWRGSQDSEMTSARIGFRLVRGI
Specific function: Together with the serine/threonine kinase pknD, may play a role in the specific interactions with host proteins during intracellular growth [H]
COG id: COG1262
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 protein kinase domain [H]
Homologues:
Organism=Homo sapiens, GI38202250, Length=301, Percent_Identity=28.9036544850498, Blast_Score=103, Evalue=3e-22, Organism=Homo sapiens, GI257470977, Length=238, Percent_Identity=30.672268907563, Blast_Score=100, Evalue=6e-21, Organism=Homo sapiens, GI257470975, Length=286, Percent_Identity=29.020979020979, Blast_Score=96, Evalue=7e-20, Organism=Homo sapiens, GI194248087, Length=283, Percent_Identity=31.095406360424, Blast_Score=92, Evalue=2e-18, Organism=Homo sapiens, GI194248088, Length=293, Percent_Identity=30.7167235494881, Blast_Score=89, Evalue=1e-17, Organism=Homo sapiens, GI226437577, Length=177, Percent_Identity=35.0282485875706, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI194248090, Length=175, Percent_Identity=33.7142857142857, Blast_Score=68, Evalue=2e-11, Organism=Drosophila melanogaster, GI20130397, Length=301, Percent_Identity=29.2358803986711, Blast_Score=92, Evalue=9e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016187 - InterPro: IPR011009 - InterPro: IPR000719 - InterPro: IPR017442 - InterPro: IPR005532 [H]
Pfam domain/function: PF03781 DUF323; PF00069 Pkinase [H]
EC number: =2.7.11.1 [H]
Molecular weight: Translated: 59564; Mature: 59433
Theoretical pI: Translated: 9.53; Mature: 9.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAEDRLYRSPDDAIPLYLALRARSDGRDRVAEEGLRRALLRLLVLADGLLLQPQAQEEAL CCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCHHHHHH EQAGDVTMVALSLAPQDPRVHRLQSRVETAQRVLAFNLAGEDDLRAGTLGESSRSALDHF HHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH RDALGLDPDNARARQGLAAVESAMIRYAEQAAETTHFDSATYWLDVASTVREQAPTVIDA HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHH RRRIAILRIEKIAALRDAVLRAISDPKKLKSAHALFTEIVRIAAPGDAVISELRERINRA HHHEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH THYGSFRRGQVFTDAMQDGTRGPQMLVVPHGSFQMGATDTEVGASAAERPQHHVRFERGF HHCCCCCCCCHHHHHHHCCCCCCEEEEEECCCEECCCCCHHHCCHHHHCCHHHHHHHCCC AMSITEVTVAQFRRFVEQTGYRPRATRRGHSLVYDERSGNFVRRSGVDWQSGYDGRAAAP EEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCEEEECCCCCCCCCCCCCCCC NDPVMHVSVRDAEAYAAWMSRQTGRYYRLPSEAEFEYALRAGRQGYYPWGNAAVPVTGNY CCCEEEEEECCHHHHHHHHHHCCCCEEECCCCCHHHHHHHCCCCCCCCCCCEEEEEECCC TGGNDVSPSGRRWANAFIGYGDRYWAVAPVASFRANAWGLHDMGGNLSEWVADCWHSSYR CCCCCCCCCCHHHHHHHHCCCCCEEEECCHHHHCCCCCCCHHCCCCHHHHHHHHHHHHHC RAPADGVAWYNPGCRQRLVRGGSWANSPQQTRAAWRGSQDSEMTSARIGFRLVRGI CCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCC >Mature Secondary Structure AEDRLYRSPDDAIPLYLALRARSDGRDRVAEEGLRRALLRLLVLADGLLLQPQAQEEAL CCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCHHHHHH EQAGDVTMVALSLAPQDPRVHRLQSRVETAQRVLAFNLAGEDDLRAGTLGESSRSALDHF HHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH RDALGLDPDNARARQGLAAVESAMIRYAEQAAETTHFDSATYWLDVASTVREQAPTVIDA HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHH RRRIAILRIEKIAALRDAVLRAISDPKKLKSAHALFTEIVRIAAPGDAVISELRERINRA HHHEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH THYGSFRRGQVFTDAMQDGTRGPQMLVVPHGSFQMGATDTEVGASAAERPQHHVRFERGF HHCCCCCCCCHHHHHHHCCCCCCEEEEEECCCEECCCCCHHHCCHHHHCCHHHHHHHCCC AMSITEVTVAQFRRFVEQTGYRPRATRRGHSLVYDERSGNFVRRSGVDWQSGYDGRAAAP EEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCEEEECCCCCCCCCCCCCCCC NDPVMHVSVRDAEAYAAWMSRQTGRYYRLPSEAEFEYALRAGRQGYYPWGNAAVPVTGNY CCCEEEEEECCHHHHHHHHHHCCCCEEECCCCCHHHHHHHCCCCCCCCCCCEEEEEECCC TGGNDVSPSGRRWANAFIGYGDRYWAVAPVASFRANAWGLHDMGGNLSEWVADCWHSSYR CCCCCCCCCCHHHHHHHHCCCCCEEEECCHHHHCCCCCCCHHCCCCHHHHHHHHHHHHHC RAPADGVAWYNPGCRQRLVRGGSWANSPQQTRAAWRGSQDSEMTSARIGFRLVRGI CCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10684935 [H]