| Definition | Xylella fastidiosa Temecula1, complete genome. |
|---|---|
| Accession | NC_004556 |
| Length | 2,519,802 |
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The map label for this gene is pspA
Identifier: 28199966
GI number: 28199966
Start: 2495712
End: 2497022
Strand: Reverse
Name: pspA
Synonym: PD2110
Alternate gene names: NA
Gene position: 2497022-2495712 (Counterclockwise)
Preceding gene: 28199967
Following gene: 28199965
Centisome position: 99.1
GC content: 52.33
Gene sequence:
>1311_bases GTGGCCACCGGCCAACTGACCGAAGGCAGCCCCCTACACGCCGCCCTCCATGCCCTGCTGGCCTGCGCCGGTGCTGGGGC CAGCCAACAACGCTGCAGCAGTGGCGCCCAAGGCGCCGCCGCCTCCAGCGTCCTCACCGGATTATTTAGCGACCCCCGCC CCGAAGACACCGCCCAAGACCGCGAAGCCAAACGCAACCTCATTACCTCCATCGTCACCGGCATCGCCAGCACCACCCAC ACGGATGCGGCCACCGCCACCCATGCCGCCATCGCTGCCGTGGATAACAACTGGTTGGCGGCCAAACAATACGTTCAAAT GGTAAGCGAGGAGCTTGAGGCCGCTACGGAGAAAGACAAAGGCCGCTTGGAAGAGGAGAAAGTAAGAGCGAAGTGGCGTG AGATCAGTGCCCGCCAAGATAAACTCACTGCTGATGGACTCTTAAAAGGCTTAAAGGAGTCAGGCATCAGCAATATCAAC GGGCTGGAGCACTTGATCCTGCATCCGGTGGATGTCTTTCATGAGTTGGAGAAAATCCTTACCCACCCAAAATTACTGGT GCAATTAGGTGAGCGCGCCTTTCAAGAACTGCTTAACAAGGTTTCTCGCATGTCGGAAGCTCTCATTGTTGGAGGCGATC AACATGCCAAGCAGTTTGGCGAAGATCTCGGCTCAGTGATCGCGGATGTAGGCTTTGCATTGGCTGCGGCCGGCACCGTC AAAGCGGGAGAGATCCTCGCCGAAGCAGGCATCAATCTCAGTAAAGATGTCTTGGAGGGGATGGCTACTTCCAAAGCCAA TAAGCTGTCCAACGTTGATGACATTGTCAGCGCAGAACAAGAAGCACTGACGCGGATAGGTAATCACCCCAACGGCCCGG ATGTAACCCAAAAACCGCCTGGTCAATACATCGCGTTGCAGCAGGGGGCATTTAATAAAGCAATAGCCTTAGTTGATAAA AGTAACTCAAGTAGCGAATTTGTTTTTTCGGGTTTAAAAGCCAAAGTCACACCGCGCGGCTCTGTCGGAGGGAGTAATAA AGCGGGTAATGTGAAGGTGCTTGAATCAGAAGCATTCAGTGATCAGAAAATCAGAGAGTTTGCACAGCAATTGGCTGGAG ATGTGCCTTTAAAGGAGACGAGGACACCGGGGGTTTATGCGGCTAAATTGAGTGATGGAAGCTGGGTACGTTTGAGGTCT GTTTCTTCTTCAAATAATGAGACTAAAGCGAGGTGGACGATTGATATCGAAAAGAATCCCACTTTGATGGAGCTTACAAA AACCGAAAAATTTGAAATTAAATTTAGGTGA
Upstream 100 bases:
>100_bases CGGTGCCAGCGGCAACGTCAGCGCTGCCAGCAGCGACCTTGCCAAACACATGATCGTCAACTACGTCCAACAACAAGGCG CCACCGCCATTGGCCACTGG
Downstream 100 bases:
>100_bases TAGGTGATTTTATGTTAACGCAAGAGCAGATAGATGATTTTTGTGAGGTGTTAGGGGGTGCTTTGGATGGCCTTTGGAGT TATATAGGGAGGATGCATGG
Product: hemagglutinin-like secreted protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 436; Mature: 435
Protein sequence:
>436_residues MATGQLTEGSPLHAALHALLACAGAGASQQRCSSGAQGAAASSVLTGLFSDPRPEDTAQDREAKRNLITSIVTGIASTTH TDAATATHAAIAAVDNNWLAAKQYVQMVSEELEAATEKDKGRLEEEKVRAKWREISARQDKLTADGLLKGLKESGISNIN GLEHLILHPVDVFHELEKILTHPKLLVQLGERAFQELLNKVSRMSEALIVGGDQHAKQFGEDLGSVIADVGFALAAAGTV KAGEILAEAGINLSKDVLEGMATSKANKLSNVDDIVSAEQEALTRIGNHPNGPDVTQKPPGQYIALQQGAFNKAIALVDK SNSSSEFVFSGLKAKVTPRGSVGGSNKAGNVKVLESEAFSDQKIREFAQQLAGDVPLKETRTPGVYAAKLSDGSWVRLRS VSSSNNETKARWTIDIEKNPTLMELTKTEKFEIKFR
Sequences:
>Translated_436_residues MATGQLTEGSPLHAALHALLACAGAGASQQRCSSGAQGAAASSVLTGLFSDPRPEDTAQDREAKRNLITSIVTGIASTTH TDAATATHAAIAAVDNNWLAAKQYVQMVSEELEAATEKDKGRLEEEKVRAKWREISARQDKLTADGLLKGLKESGISNIN GLEHLILHPVDVFHELEKILTHPKLLVQLGERAFQELLNKVSRMSEALIVGGDQHAKQFGEDLGSVIADVGFALAAAGTV KAGEILAEAGINLSKDVLEGMATSKANKLSNVDDIVSAEQEALTRIGNHPNGPDVTQKPPGQYIALQQGAFNKAIALVDK SNSSSEFVFSGLKAKVTPRGSVGGSNKAGNVKVLESEAFSDQKIREFAQQLAGDVPLKETRTPGVYAAKLSDGSWVRLRS VSSSNNETKARWTIDIEKNPTLMELTKTEKFEIKFR >Mature_435_residues ATGQLTEGSPLHAALHALLACAGAGASQQRCSSGAQGAAASSVLTGLFSDPRPEDTAQDREAKRNLITSIVTGIASTTHT DAATATHAAIAAVDNNWLAAKQYVQMVSEELEAATEKDKGRLEEEKVRAKWREISARQDKLTADGLLKGLKESGISNING LEHLILHPVDVFHELEKILTHPKLLVQLGERAFQELLNKVSRMSEALIVGGDQHAKQFGEDLGSVIADVGFALAAAGTVK AGEILAEAGINLSKDVLEGMATSKANKLSNVDDIVSAEQEALTRIGNHPNGPDVTQKPPGQYIALQQGAFNKAIALVDKS NSSSEFVFSGLKAKVTPRGSVGGSNKAGNVKVLESEAFSDQKIREFAQQLAGDVPLKETRTPGVYAAKLSDGSWVRLRSV SSSNNETKARWTIDIEKNPTLMELTKTEKFEIKFR
Specific function: Unknown
COG id: COG3210
COG function: function code U; Large exoproteins involved in heme utilization or adhesion
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46523; Mature: 46392
Theoretical pI: Translated: 6.53; Mature: 6.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATGQLTEGSPLHAALHALLACAGAGASQQRCSSGAQGAAASSVLTGLFSDPRPEDTAQD CCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHH REAKRNLITSIVTGIASTTHTDAATATHAAIAAVDNNWLAAKQYVQMVSEELEAATEKDK HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHH GRLEEEKVRAKWREISARQDKLTADGLLKGLKESGISNINGLEHLILHPVDVFHELEKIL CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH THPKLLVQLGERAFQELLNKVSRMSEALIVGGDQHAKQFGEDLGSVIADVGFALAAAGTV HCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCC KAGEILAEAGINLSKDVLEGMATSKANKLSNVDDIVSAEQEALTRIGNHPNGPDVTQKPP HHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC GQYIALQQGAFNKAIALVDKSNSSSEFVFSGLKAKVTPRGSVGGSNKAGNVKVLESEAFS CCEEEEECCCCCCEEEEEECCCCCCHHHHHCCEEEECCCCCCCCCCCCCCEEEEECCCCC DQKIREFAQQLAGDVPLKETRTPGVYAAKLSDGSWVRLRSVSSSNNETKARWTIDIEKNP HHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCC TLMELTKTEKFEIKFR CEEEEECCCEEEEEEC >Mature Secondary Structure ATGQLTEGSPLHAALHALLACAGAGASQQRCSSGAQGAAASSVLTGLFSDPRPEDTAQD CCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHH REAKRNLITSIVTGIASTTHTDAATATHAAIAAVDNNWLAAKQYVQMVSEELEAATEKDK HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHH GRLEEEKVRAKWREISARQDKLTADGLLKGLKESGISNINGLEHLILHPVDVFHELEKIL CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH THPKLLVQLGERAFQELLNKVSRMSEALIVGGDQHAKQFGEDLGSVIADVGFALAAAGTV HCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCC KAGEILAEAGINLSKDVLEGMATSKANKLSNVDDIVSAEQEALTRIGNHPNGPDVTQKPP HHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC GQYIALQQGAFNKAIALVDKSNSSSEFVFSGLKAKVTPRGSVGGSNKAGNVKVLESEAFS CCEEEEECCCCCCEEEEEECCCCCCHHHHHCCEEEECCCCCCCCCCCCCCEEEEECCCCC DQKIREFAQQLAGDVPLKETRTPGVYAAKLSDGSWVRLRSVSSSNNETKARWTIDIEKNP HHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCC TLMELTKTEKFEIKFR CEEEEECCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA