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The map label for this gene is hsdS

Identifier: 28199931

GI number: 28199931

Start: 2453187

End: 2454521

Strand: Reverse

Name: hsdS

Synonym: PD2071

Alternate gene names: NA

Gene position: 2454521-2453187 (Counterclockwise)

Preceding gene: 28199932

Following gene: 28199930

Centisome position: 97.41

GC content: 57.98

Gene sequence:

>1335_bases
ATGGCGGTGGCGAGCGTGTATCCGAACTACCGGCAGCCGAAGATGCGCTGGCTGCCCGCTGTGCCGGAACACTGGAACGA
GCAACGCGCCAAAACTTTCTTCCGCGAGGTGGATGAGCGTTCGAAGACCGGACAGGAAGAACTGCTGTCGGTGTCTCACC
TCACCGGCGTTACTTCGCGCAGCCAGAAGAATGTCACGATGTTCAAGGCAGCGAGCTACGTTGGCTCCAAGCTGTGCCGC
CCCGGCGACATCGTCATCAACACGCTGTGGGCGTGGATGGCGGCGCTTGGTGCGAGCAGGCACGTGGGCATCGTCAGTCC
TGCCTATGGCGTGTACCGCCCGCACCACGCCGACAGCTTCAACCCAGCGTATCTCGATTACCTGTTGCGCACCCGCGCCT
ACGTGGCCGAATACATCGGGCGCTCGACCGGCATCCGATCCTCTCGTTTGCGCCTGTACCCGAACCAGTTCCTCGACATT
GCTCTGATCCAGCCCCCACGCCCCGAGCAAGACCAAATCGTCGCCTACCTGCGGGCGCAGGACGCGCACATCGCCCGCTT
TATCAAGGCCAAGCGCGATCTCATCAAGCTGCTCACCGAGCAGAAGCTGCGCATTATCGACCACGCGGTGACGCGCGGGC
TTGATGCATCGGTGGCGCTAAAGCCCTCCGGCATCGAATGGCTGGGGGATGTGCCGGTGCATTGCAGGATAGAACGCCTT
AAATGGGTTTGTCGATTTACATATGGAGATTCACTTTCAGACGCTAATCGCCGCCAAGGCAATGTTCCCGTGTACGGCTC
CAACGGGCCGGTAGGTATGCACGATGTGGCCAATGTCGTGGGCCCTTGCATAGTTATCGGCCGGAAAGGTTCATTTGGAA
AGGTGAACTACTCCGAGAGCGACCTGTTCGCAATCGACACAACGTATTTTGTCGATAAAAAATGCACGAAAGCTAATATC
CGATGGCTTTATTACGTATTGATTTGGTGCCGGCTAGACCGAATCTCAAAAGATTCGGCGGTTCCTGGATTGGACAGAAC
CGATGCGCTGAACACCCTCGTGCCAGTGCCAGATGGGGCGGAGCAAGAGCAAATTGCAAAACAGCTTGATATCGAGACAG
CAGAGGTAAATGACGCCATCACCAAGGTGGAGGAAGAAATCACCCTCATCCGCGAATACCGCGACCGCCTGATTACCGAT
GTGGTCACCGGCCAAGTGGACGTACGTGGCTGGCAGCCCGACGTGGAGGATGTGGTAGAAGACGCAGTGCTGGCCGCGCT
GGGCGATGACCAGGAAGAGATGACCGAACAGGAGGATGACGATGACGAGGACTGA

Upstream 100 bases:

>100_bases
AGCCCGTGCCGTTGCGGACGCTGGCGGACATCCGCGCGGACATCCTTGCGCTGGAGCAGCAGACGGAAGGGTTGTTGCAT
AAGATTGTGGGGAACGTGTG

Downstream 100 bases:

>100_bases
CACCAGCGAGCGCTGGTTCGAGGCGCGCGTGGTGCGTGGCCTGACCGGTGTGCCGCAGCCCGAGTACAGCCATGAGCTGG
CACCCACGGACTTTGCCGCC

Product: type I restriction-modification system specificity determinant

Products: NA

Alternate protein names: Restriction System DNA Specificity Domain Protein; Type I Restriction- System S Subunit; Type I Restriction- System Specificity Determinant; Type I Restriction- System Specificity Subunit; Restriction Endonuclease S Subunit; Type I Restriction S Subunit; Type I Restriction- System; Type I Restriction DNA Specificity Domain Protein; Type I Site-Specific Restriction- System S Subunit; Type I Restriction-; Type I Restriction Specificity Protein; Restriction System DNA Specificity Domain; Type I Site-Specific Deoxyribonuclease; Restriction Endonuclease S Subunits; Type I Restriction- Subunit S; Type I Restriction EcoEI Specificity Protein; Type I Restriction- System Specifity Subunit; Restriction Endonuclease S Subunits-Like; Type I Restriction System DNA Specificity Domain Protein; Type I Restriction DNA Specificity Protein; Type I DNA Specificity S Subunit; Type I Restriction- Methylase S Subunit; Type I Restriction Specificity Subunit; Type I Restriction-Mod; Type I Restriction- System Specificity Determinant Protein; Restriction System Type I; Type I Restriction Ecocificity Protein; Specificity Determinant HsdS-Like; Type I Restriction System Specificity Protein HsdS; Type I Restriction Protein S; Type I Restriction/ System Specificity Determinant HsdS; Type I Restriction- System Subunit S; Type I Restriction- System Specificity Subunit S; Type I Restriction; Restriction Endonuclease S Subunits-Like Protein

Number of amino acids: Translated: 444; Mature: 443

Protein sequence:

>444_residues
MAVASVYPNYRQPKMRWLPAVPEHWNEQRAKTFFREVDERSKTGQEELLSVSHLTGVTSRSQKNVTMFKAASYVGSKLCR
PGDIVINTLWAWMAALGASRHVGIVSPAYGVYRPHHADSFNPAYLDYLLRTRAYVAEYIGRSTGIRSSRLRLYPNQFLDI
ALIQPPRPEQDQIVAYLRAQDAHIARFIKAKRDLIKLLTEQKLRIIDHAVTRGLDASVALKPSGIEWLGDVPVHCRIERL
KWVCRFTYGDSLSDANRRQGNVPVYGSNGPVGMHDVANVVGPCIVIGRKGSFGKVNYSESDLFAIDTTYFVDKKCTKANI
RWLYYVLIWCRLDRISKDSAVPGLDRTDALNTLVPVPDGAEQEQIAKQLDIETAEVNDAITKVEEEITLIREYRDRLITD
VVTGQVDVRGWQPDVEDVVEDAVLAALGDDQEEMTEQEDDDDED

Sequences:

>Translated_444_residues
MAVASVYPNYRQPKMRWLPAVPEHWNEQRAKTFFREVDERSKTGQEELLSVSHLTGVTSRSQKNVTMFKAASYVGSKLCR
PGDIVINTLWAWMAALGASRHVGIVSPAYGVYRPHHADSFNPAYLDYLLRTRAYVAEYIGRSTGIRSSRLRLYPNQFLDI
ALIQPPRPEQDQIVAYLRAQDAHIARFIKAKRDLIKLLTEQKLRIIDHAVTRGLDASVALKPSGIEWLGDVPVHCRIERL
KWVCRFTYGDSLSDANRRQGNVPVYGSNGPVGMHDVANVVGPCIVIGRKGSFGKVNYSESDLFAIDTTYFVDKKCTKANI
RWLYYVLIWCRLDRISKDSAVPGLDRTDALNTLVPVPDGAEQEQIAKQLDIETAEVNDAITKVEEEITLIREYRDRLITD
VVTGQVDVRGWQPDVEDVVEDAVLAALGDDQEEMTEQEDDDDED
>Mature_443_residues
AVASVYPNYRQPKMRWLPAVPEHWNEQRAKTFFREVDERSKTGQEELLSVSHLTGVTSRSQKNVTMFKAASYVGSKLCRP
GDIVINTLWAWMAALGASRHVGIVSPAYGVYRPHHADSFNPAYLDYLLRTRAYVAEYIGRSTGIRSSRLRLYPNQFLDIA
LIQPPRPEQDQIVAYLRAQDAHIARFIKAKRDLIKLLTEQKLRIIDHAVTRGLDASVALKPSGIEWLGDVPVHCRIERLK
WVCRFTYGDSLSDANRRQGNVPVYGSNGPVGMHDVANVVGPCIVIGRKGSFGKVNYSESDLFAIDTTYFVDKKCTKANIR
WLYYVLIWCRLDRISKDSAVPGLDRTDALNTLVPVPDGAEQEQIAKQLDIETAEVNDAITKVEEEITLIREYRDRLITDV
VTGQVDVRGWQPDVEDVVEDAVLAALGDDQEEMTEQEDDDDED

Specific function: Unknown

COG id: COG0732

COG function: function code V; Restriction endonuclease S subunits

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 50181; Mature: 50050

Theoretical pI: Translated: 5.70; Mature: 5.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVASVYPNYRQPKMRWLPAVPEHWNEQRAKTFFREVDERSKTGQEELLSVSHLTGVTSR
CCCCCCCCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC
SQKNVTMFKAASYVGSKLCRPGDIVINTLWAWMAALGASRHVGIVSPAYGVYRPHHADSF
CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCHHCCCCCCCCCC
NPAYLDYLLRTRAYVAEYIGRSTGIRSSRLRLYPNQFLDIALIQPPRPEQDQIVAYLRAQ
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCEEEEEECCCCCCHHHHHHHHHHH
DAHIARFIKAKRDLIKLLTEQKLRIIDHAVTRGLDASVALKPSGIEWLGDVPVHCRIERL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHCCCCCEEEHHHH
KWVCRFTYGDSLSDANRRQGNVPVYGSNGPVGMHDVANVVGPCIVIGRKGSFGKVNYSES
HHHHEEECCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHCCEEEEECCCCCCCCCCCCC
DLFAIDTTYFVDKKCTKANIRWLYYVLIWCRLDRISKDSAVPGLDRTDALNTLVPVPDGA
CEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCEECCCCCC
EQEQIAKQLDIETAEVNDAITKVEEEITLIREYRDRLITDVVTGQVDVRGWQPDVEDVVE
CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHH
DAVLAALGDDQEEMTEQEDDDDED
HHHHHHHCCCHHHHHCCCCCCCCC
>Mature Secondary Structure 
AVASVYPNYRQPKMRWLPAVPEHWNEQRAKTFFREVDERSKTGQEELLSVSHLTGVTSR
CCCCCCCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC
SQKNVTMFKAASYVGSKLCRPGDIVINTLWAWMAALGASRHVGIVSPAYGVYRPHHADSF
CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCHHCCCCCCCCCC
NPAYLDYLLRTRAYVAEYIGRSTGIRSSRLRLYPNQFLDIALIQPPRPEQDQIVAYLRAQ
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCEEEEEECCCCCCHHHHHHHHHHH
DAHIARFIKAKRDLIKLLTEQKLRIIDHAVTRGLDASVALKPSGIEWLGDVPVHCRIERL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHCCCCCEEEHHHH
KWVCRFTYGDSLSDANRRQGNVPVYGSNGPVGMHDVANVVGPCIVIGRKGSFGKVNYSES
HHHHEEECCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHCCEEEEECCCCCCCCCCCCC
DLFAIDTTYFVDKKCTKANIRWLYYVLIWCRLDRISKDSAVPGLDRTDALNTLVPVPDGA
CEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCEECCCCCC
EQEQIAKQLDIETAEVNDAITKVEEEITLIREYRDRLITDVVTGQVDVRGWQPDVEDVVE
CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHH
DAVLAALGDDQEEMTEQEDDDDED
HHHHHHHCCCHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA