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The map label for this gene is ydiU [C]

Identifier: 28199858

GI number: 28199858

Start: 2342674

End: 2344233

Strand: Reverse

Name: ydiU [C]

Synonym: PD1992

Alternate gene names: 28199858

Gene position: 2344233-2342674 (Counterclockwise)

Preceding gene: 28199859

Following gene: 28199857

Centisome position: 93.03

GC content: 54.17

Gene sequence:

>1560_bases
ATGTGGCCACTGCGTTTTAACAACCGTTTTATTGATGTACTGCCTTGCGATCCAGAGGTCAGCTTACGCTCGCGTCAGGT
TTTAGAAGCTTGGTCCAGGGTGGCACCCACCCCGGTGCCCATGCCGTGTTTGCTGGCGTATTCATCTGAAGTGGCAGCGA
TATTGAATTTCGATGCAGAGGAACTGGTGACTCCACGTTTCGTCGAGGTGTTTAGCGGCAATGCGTTATATACGGGTATG
CAGCCGTATGCTGTCAATTATGGTGGACATCAGTTTGGGCAATGGGTAGGGCAGCTCGGTGATGGTCGTGTGATTACGTT
AGGCGAATTGCTTGGTGCCGATGGCGTGTACTACGAGTTGCAGCTTAAGGGGGCTGGACCTACGCCGTATTCGCGTGGTG
CTGATGGCCGTGCTGTATTGAGATCGTCCATCCGTGAGTTCTTGTGTAGTGAGGCGATGCATCATCTTGGGATACCAACC
ACGCGCGCGTTGAGTCTGATTGCCACAGGGGATACGGTGATACGCGACATGCTTTATGACGGTCACCCTGCCCCTGAGCC
TAGTGCGATTGTGTGCCGCGTAGCGCCCTCTTTTATACGTTTTGGCACATTTGAGTTGCCGGCTTCGCGTGGTGATATCG
ATCTGCTACGTCGGCTGGTCGAGTTTACGATCATACGGGATTACCCCCATTTGCACGGTGCAGGGGAGACGTTGTACGCG
GATTGGTTTGCCGAGATTTGTACACGTACCGCGGAGCTTGTTGCCCACTGGATGCGGGTTGGTTTTGTACATGGGGTGAT
GAATACCGACAACATGTCGATTCTTGGTTTGACGATCGACTACGGCCCATACGGCTGGATCGATAATAATGATCTGGACT
GGACTCCAAATGTGACCGATGTCCAGAGTCGCCGTTATCGTTTTGGTGCTCAGCCGCAAGTGGCGTACTGGAACCTAGGT
TGTTTGGCGCGTGCTCTGGCGCCACTGTTTAGTGATGCAGCGTCATTGCAGGCAGGACTAGAACGGTTCCGTGCCACGTA
CTTAGCGGCCGAGCGCCGTGATGCTGCGGCTAAACTCGGCTTCGCGGCTTGCTTTGATGAAGACCTGGAGTTGTTTGATG
CATTGCGTACCTGCATGCACCAAGCGGAGATGGATATGACGCTGACTTTCCTGGGATTGGCTGATTGGGAGCCGAACATG
CCGGACAGTCTGTCTCTGTGGGCTGAGGCATTTTACGATCCTGTCAAACGTGATGCGCAGGCACCCATGTTGCGTGATTG
GTTGCAGCGCTATGCAGCGCGTCTTTCTGTGGATCCCTTGCCGGTTGCCGAACGGCATGAGCGCATGCGTTTGGCTAATC
CACGCTATGTGTTGCGCAATTATTTGACGCAGCAGGCGATCGAATGTGCTGAGCAAGGCGATCTCACTGAGTTACATGCA
CTGTTGGAGGTCATGCGCCGACCCTATGATTTTCAGCTAGGACGTGAGGCATATGCGATGCGGCGTCCAGAGTGGGCGCG
CAGCCGCATTGGTTGTTCGATGCTGTCTTGCAGTTCTTGA

Upstream 100 bases:

>100_bases
GTGATTCTGAGGGTAGGTTGTGTGGAATATGCGCAACCTTCGCTAATTGGGATGCGGCAATATCACAAGGTATTCAGCAC
CAATGGCGTATCTGATTCAT

Downstream 100 bases:

>100_bases
GTGGAGACAGTGTCAGGTGTTTGATTCACACAGTGTGTGGCTGTGTCAGGAGTGAATTCAAATCTTGCATTGGTTGTGGT
GTTCCAGAGTGCTGATGCAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 519; Mature: 519

Protein sequence:

>519_residues
MWPLRFNNRFIDVLPCDPEVSLRSRQVLEAWSRVAPTPVPMPCLLAYSSEVAAILNFDAEELVTPRFVEVFSGNALYTGM
QPYAVNYGGHQFGQWVGQLGDGRVITLGELLGADGVYYELQLKGAGPTPYSRGADGRAVLRSSIREFLCSEAMHHLGIPT
TRALSLIATGDTVIRDMLYDGHPAPEPSAIVCRVAPSFIRFGTFELPASRGDIDLLRRLVEFTIIRDYPHLHGAGETLYA
DWFAEICTRTAELVAHWMRVGFVHGVMNTDNMSILGLTIDYGPYGWIDNNDLDWTPNVTDVQSRRYRFGAQPQVAYWNLG
CLARALAPLFSDAASLQAGLERFRATYLAAERRDAAAKLGFAACFDEDLELFDALRTCMHQAEMDMTLTFLGLADWEPNM
PDSLSLWAEAFYDPVKRDAQAPMLRDWLQRYAARLSVDPLPVAERHERMRLANPRYVLRNYLTQQAIECAEQGDLTELHA
LLEVMRRPYDFQLGREAYAMRRPEWARSRIGCSMLSCSS

Sequences:

>Translated_519_residues
MWPLRFNNRFIDVLPCDPEVSLRSRQVLEAWSRVAPTPVPMPCLLAYSSEVAAILNFDAEELVTPRFVEVFSGNALYTGM
QPYAVNYGGHQFGQWVGQLGDGRVITLGELLGADGVYYELQLKGAGPTPYSRGADGRAVLRSSIREFLCSEAMHHLGIPT
TRALSLIATGDTVIRDMLYDGHPAPEPSAIVCRVAPSFIRFGTFELPASRGDIDLLRRLVEFTIIRDYPHLHGAGETLYA
DWFAEICTRTAELVAHWMRVGFVHGVMNTDNMSILGLTIDYGPYGWIDNNDLDWTPNVTDVQSRRYRFGAQPQVAYWNLG
CLARALAPLFSDAASLQAGLERFRATYLAAERRDAAAKLGFAACFDEDLELFDALRTCMHQAEMDMTLTFLGLADWEPNM
PDSLSLWAEAFYDPVKRDAQAPMLRDWLQRYAARLSVDPLPVAERHERMRLANPRYVLRNYLTQQAIECAEQGDLTELHA
LLEVMRRPYDFQLGREAYAMRRPEWARSRIGCSMLSCSS
>Mature_519_residues
MWPLRFNNRFIDVLPCDPEVSLRSRQVLEAWSRVAPTPVPMPCLLAYSSEVAAILNFDAEELVTPRFVEVFSGNALYTGM
QPYAVNYGGHQFGQWVGQLGDGRVITLGELLGADGVYYELQLKGAGPTPYSRGADGRAVLRSSIREFLCSEAMHHLGIPT
TRALSLIATGDTVIRDMLYDGHPAPEPSAIVCRVAPSFIRFGTFELPASRGDIDLLRRLVEFTIIRDYPHLHGAGETLYA
DWFAEICTRTAELVAHWMRVGFVHGVMNTDNMSILGLTIDYGPYGWIDNNDLDWTPNVTDVQSRRYRFGAQPQVAYWNLG
CLARALAPLFSDAASLQAGLERFRATYLAAERRDAAAKLGFAACFDEDLELFDALRTCMHQAEMDMTLTFLGLADWEPNM
PDSLSLWAEAFYDPVKRDAQAPMLRDWLQRYAARLSVDPLPVAERHERMRLANPRYVLRNYLTQQAIECAEQGDLTELHA
LLEVMRRPYDFQLGREAYAMRRPEWARSRIGCSMLSCSS

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family

Homologues:

Organism=Homo sapiens, GI32880229, Length=422, Percent_Identity=44.3127962085308, Blast_Score=297, Evalue=1e-80,
Organism=Escherichia coli, GI1787999, Length=511, Percent_Identity=42.4657534246575, Blast_Score=347, Evalue=8e-97,
Organism=Saccharomyces cerevisiae, GI6325034, Length=341, Percent_Identity=38.1231671554252, Blast_Score=201, Evalue=2e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1992_XYLFT (Q87A39)

Other databases:

- EMBL:   AE009442
- RefSeq:   NP_780172.1
- STRING:   Q87A39
- GeneID:   1143334
- GenomeReviews:   AE009442_GR
- KEGG:   xft:PD1992
- eggNOG:   COG0397
- HOGENOM:   HBG683993
- OMA:   FGSYNPR
- ProtClustDB:   PRK00029
- BioCyc:   XFAS183190:PD_1992-MONOMER
- HAMAP:   MF_00692
- InterPro:   IPR003846

Pfam domain/function: PF02696 UPF0061

EC number: NA

Molecular weight: Translated: 58486; Mature: 58486

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWPLRFNNRFIDVLPCDPEVSLRSRQVLEAWSRVAPTPVPMPCLLAYSSEVAAILNFDAE
CCCCEECCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHCCCCHH
ELVTPRFVEVFSGNALYTGMQPYAVNYGGHQFGQWVGQLGDGRVITLGELLGADGVYYEL
HHCCHHHHHHHCCCEEEECCCCEEECCCCHHHHHHHHCCCCCCEEEEHHHHCCCCEEEEE
QLKGAGPTPYSRGADGRAVLRSSIREFLCSEAMHHLGIPTTRALSLIATGDTVIRDMLYD
EEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHEEEEECCHHHHHHHHHC
GHPAPEPSAIVCRVAPSFIRFGTFELPASRGDIDLLRRLVEFTIIRDYPHLHGAGETLYA
CCCCCCCCEEEEEECHHHHHCCCEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHH
DWFAEICTRTAELVAHWMRVGFVHGVMNTDNMSILGLTIDYGPYGWIDNNDLDWTPNVTD
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCH
VQSRRYRFGAQPQVAYWNLGCLARALAPLFSDAASLQAGLERFRATYLAAERRDAAAKLG
HHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FAACFDEDLELFDALRTCMHQAEMDMTLTFLGLADWEPNMPDSLSLWAEAFYDPVKRDAQ
HHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCC
APMLRDWLQRYAARLSVDPLPVAERHERMRLANPRYVLRNYLTQQAIECAEQGDLTELHA
CHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHH
LLEVMRRPYDFQLGREAYAMRRPEWARSRIGCSMLSCSS
HHHHHHCCCCCCCCHHHHHHCCCHHHHHHHCCHHHCCCC
>Mature Secondary Structure
MWPLRFNNRFIDVLPCDPEVSLRSRQVLEAWSRVAPTPVPMPCLLAYSSEVAAILNFDAE
CCCCEECCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHCCCCHH
ELVTPRFVEVFSGNALYTGMQPYAVNYGGHQFGQWVGQLGDGRVITLGELLGADGVYYEL
HHCCHHHHHHHCCCEEEECCCCEEECCCCHHHHHHHHCCCCCCEEEEHHHHCCCCEEEEE
QLKGAGPTPYSRGADGRAVLRSSIREFLCSEAMHHLGIPTTRALSLIATGDTVIRDMLYD
EEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHEEEEECCHHHHHHHHHC
GHPAPEPSAIVCRVAPSFIRFGTFELPASRGDIDLLRRLVEFTIIRDYPHLHGAGETLYA
CCCCCCCCEEEEEECHHHHHCCCEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHH
DWFAEICTRTAELVAHWMRVGFVHGVMNTDNMSILGLTIDYGPYGWIDNNDLDWTPNVTD
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCH
VQSRRYRFGAQPQVAYWNLGCLARALAPLFSDAASLQAGLERFRATYLAAERRDAAAKLG
HHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FAACFDEDLELFDALRTCMHQAEMDMTLTFLGLADWEPNMPDSLSLWAEAFYDPVKRDAQ
HHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCC
APMLRDWLQRYAARLSVDPLPVAERHERMRLANPRYVLRNYLTQQAIECAEQGDLTELHA
CHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHH
LLEVMRRPYDFQLGREAYAMRRPEWARSRIGCSMLSCSS
HHHHHHCCCCCCCCHHHHHHCCCHHHHHHHCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12533478