| Definition | Xylella fastidiosa Temecula1, complete genome. |
|---|---|
| Accession | NC_004556 |
| Length | 2,519,802 |
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The map label for this gene is 28199764
Identifier: 28199764
GI number: 28199764
Start: 2222825
End: 2223742
Strand: Reverse
Name: 28199764
Synonym: PD1896
Alternate gene names: NA
Gene position: 2223742-2222825 (Counterclockwise)
Preceding gene: 28199765
Following gene: 28199755
Centisome position: 88.25
GC content: 55.45
Gene sequence:
>918_bases GTGGTCGCAGTGCTTTTCACGTTTTTCGCGTGGTGGCAGCGTGATCGCGATGTTGCCGGAACGCCGTTTGTCAGCATACG TGGGATATTCCAGGCCGATCATCGGGCTTGGTGTGAGCATCGGCGGCGTGAGCTGACTAAGCCTGATGGATGGATGAGTC TGATTGGTTTGCATTGGTTGGGGCCGAAGGCACATTACGTTGGTAGCAGTCCCGACAATGGCATTCGCCTAGCGATGGGG CCGCCTGACATGGGGATGATTGAGCGCGATGGTGATGTTGTTTGGTTCACTCCACACGCCGGAGTGCCGCTGACTGTCGA TGGGCATCCGTTGCGTGGTCGTGTCCGTGTCTTCAGTGATGCTGATCTTGCGCCAACCACGATTGGTTTTGATGGTGGCA AGGGATGGTTGATGCTGATTCGGCGTGGGGATCGGTTGGCACTCAGGGTCAGGCACGCGGATGCACCGTCACGGTTGCAC TTTACTGGGTTGGAGTATTGGCCGTCTGATCCAGAGTGGCGGATTTCAGCGCGCTATCTGCCCAATAAGGTTGGCGCTAC GTTATCCATTTTTAACATTGTTGGGATGACTGCCAATGTGCCTAATGCGGGTGTCATTGCGTTCGAGCGTTTGGGCCGCA CCTATCATCTGCAGGCGATACGTGCGGCTGGGAAAGCACTGTTTGTGATGTTTGCTGACCGTACCAGTGGTCACGGGAGC TATCCTGCCGGGCGCTTCTTGGAGGTGGATCCACCGGATAAACAGGGGCGTGTAGTGTTGGATTTCAATCGTGCTTACAA CCCACCGTGTGCATTTACATTGTTTACCACCTGTTTACTCCCGCCCTCTGAGAATCGATTGAATCTGGCGGTGACCGCCG GTGAGAAGGCTTACCATGTGTCGAGAGTGTCGCCATGA
Upstream 100 bases:
>100_bases CCTGGGCGCGTTTTAGTTTGGCTGAGATCGATCGTTGGTTTCTTAGGGGGCGGTGATGCGGCGTGAATACCAATACGGGG CAGTATTGATATTGTTGGCT
Downstream 100 bases:
>100_bases ATGCAGGGGCGTTGTATTTGAGTGTTTGAGACCTCTATTGGGTCTTGGTCGATTCTGTCCCAGGCTGGGTGAAGGGGCAA GTCCTCATCTGCCACCGCAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 305; Mature: 305
Protein sequence:
>305_residues MVAVLFTFFAWWQRDRDVAGTPFVSIRGIFQADHRAWCEHRRRELTKPDGWMSLIGLHWLGPKAHYVGSSPDNGIRLAMG PPDMGMIERDGDVVWFTPHAGVPLTVDGHPLRGRVRVFSDADLAPTTIGFDGGKGWLMLIRRGDRLALRVRHADAPSRLH FTGLEYWPSDPEWRISARYLPNKVGATLSIFNIVGMTANVPNAGVIAFERLGRTYHLQAIRAAGKALFVMFADRTSGHGS YPAGRFLEVDPPDKQGRVVLDFNRAYNPPCAFTLFTTCLLPPSENRLNLAVTAGEKAYHVSRVSP
Sequences:
>Translated_305_residues MVAVLFTFFAWWQRDRDVAGTPFVSIRGIFQADHRAWCEHRRRELTKPDGWMSLIGLHWLGPKAHYVGSSPDNGIRLAMG PPDMGMIERDGDVVWFTPHAGVPLTVDGHPLRGRVRVFSDADLAPTTIGFDGGKGWLMLIRRGDRLALRVRHADAPSRLH FTGLEYWPSDPEWRISARYLPNKVGATLSIFNIVGMTANVPNAGVIAFERLGRTYHLQAIRAAGKALFVMFADRTSGHGS YPAGRFLEVDPPDKQGRVVLDFNRAYNPPCAFTLFTTCLLPPSENRLNLAVTAGEKAYHVSRVSP >Mature_305_residues MVAVLFTFFAWWQRDRDVAGTPFVSIRGIFQADHRAWCEHRRRELTKPDGWMSLIGLHWLGPKAHYVGSSPDNGIRLAMG PPDMGMIERDGDVVWFTPHAGVPLTVDGHPLRGRVRVFSDADLAPTTIGFDGGKGWLMLIRRGDRLALRVRHADAPSRLH FTGLEYWPSDPEWRISARYLPNKVGATLSIFNIVGMTANVPNAGVIAFERLGRTYHLQAIRAAGKALFVMFADRTSGHGS YPAGRFLEVDPPDKQGRVVLDFNRAYNPPCAFTLFTTCLLPPSENRLNLAVTAGEKAYHVSRVSP
Specific function: Unknown
COG id: COG3358
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34000; Mature: 34000
Theoretical pI: Translated: 10.00; Mature: 10.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVAVLFTFFAWWQRDRDVAGTPFVSIRGIFQADHRAWCEHRRRELTKPDGWMSLIGLHWL CEEEEEEHHHHHHCCCCCCCCCEEEEEEEEEHHHHHHHHHHHHHCCCCCCCEEEEEEEEC GPKAHYVGSSPDNGIRLAMGPPDMGMIERDGDVVWFTPHAGVPLTVDGHPLRGRVRVFSD CCCEEECCCCCCCCEEEEECCCCCCEEECCCCEEEECCCCCCEEEECCCCCCCEEEEEEC ADLAPTTIGFDGGKGWLMLIRRGDRLALRVRHADAPSRLHFTGLEYWPSDPEWRISARYL CCCCCEEEEECCCCEEEEEEEECCEEEEEEEECCCCCEEEEEEEEECCCCCCEEEEEEEC PNKVGATLSIFNIVGMTANVPNAGVIAFERLGRTYHLQAIRAAGKALFVMFADRTSGHGS CCHHCCEEEEEEEEEEECCCCCCCCHHHHHCCCEEEEHHHHHCCEEEEEEEECCCCCCCC YPAGRFLEVDPPDKQGRVVLDFNRAYNPPCAFTLFTTCLLPPSENRLNLAVTAGEKAYHV CCCCCEEECCCCCCCCCEEEEECCCCCCCCHHEEHHHHCCCCCCCCEEEEEECCCCEEEE SRVSP ECCCC >Mature Secondary Structure MVAVLFTFFAWWQRDRDVAGTPFVSIRGIFQADHRAWCEHRRRELTKPDGWMSLIGLHWL CEEEEEEHHHHHHCCCCCCCCCEEEEEEEEEHHHHHHHHHHHHHCCCCCCCEEEEEEEEC GPKAHYVGSSPDNGIRLAMGPPDMGMIERDGDVVWFTPHAGVPLTVDGHPLRGRVRVFSD CCCEEECCCCCCCCEEEEECCCCCCEEECCCCEEEECCCCCCEEEECCCCCCCEEEEEEC ADLAPTTIGFDGGKGWLMLIRRGDRLALRVRHADAPSRLHFTGLEYWPSDPEWRISARYL CCCCCEEEEECCCCEEEEEEEECCEEEEEEEECCCCCEEEEEEEEECCCCCCEEEEEEEC PNKVGATLSIFNIVGMTANVPNAGVIAFERLGRTYHLQAIRAAGKALFVMFADRTSGHGS CCHHCCEEEEEEEEEEECCCCCCCCHHHHHCCCEEEEHHHHHCCEEEEEEEECCCCCCCC YPAGRFLEVDPPDKQGRVVLDFNRAYNPPCAFTLFTTCLLPPSENRLNLAVTAGEKAYHV CCCCCEEECCCCCCCCCEEEEECCCCCCCCHHEEHHHHCCCCCCCCEEEEEECCCCEEEE SRVSP ECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA