| Definition | Xylella fastidiosa Temecula1, complete genome. |
|---|---|
| Accession | NC_004556 |
| Length | 2,519,802 |
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The map label for this gene is sac1 [C]
Identifier: 28199744
GI number: 28199744
Start: 2204377
End: 2206239
Strand: Reverse
Name: sac1 [C]
Synonym: PD1875
Alternate gene names: 28199744
Gene position: 2206239-2204377 (Counterclockwise)
Preceding gene: 28199745
Following gene: 28199743
Centisome position: 87.56
GC content: 52.39
Gene sequence:
>1863_bases ATGGATACTGCTTTGACGTTGACCAATGACATGAAGCTGGTGCTCGGTTTGGTCGGTTTTACGATGGCAATGTTTGTTTG GGAGCGGATACGCGCTGATGTCGTGGCGTTGATTGTGTTAGTGGTGCTTGGGACAACGGGATTGATCCCTCCGGAAGAGC TTTTCGGCGGTTTCTCCGGTAATGCCGTGATGAGCATCATCGCTACGGCGATTTTGGGTGCGGGACTGGAACGTACCGGT GCGTTGAATCGCTTAGCGGCTTGGCTGTTGCGTCGCTCGCATGGCAGTGAACGGCGGTTGTTGTTGATCACGTTGGGGGT TGCCGGACTCAACTCTCCATTTATGCAAAACACGTCGGTGATGGCGTTATATATGCCGGTTGCTGCGCGTTTAGCGGCAC GTACCGGGCTGACGCTACAGCGATTATTGCTACCGATTGCTGCGATGATCGTCATGGGTGGTGCGTTGACCATGGTCGGT AATTCGCCGTTGATTTTGCTAAATGATTTGTTGCAATCGGCGAATAACAATTTGCCTTCGGGAATCGCCACTATTGAGCC GTTGCGCATGTTTGCCCCGCTGCCGATCGGCGTGGCATTACTGATTGCGGCGTTGCTTTACTTCTTTTTTTATGGTGACC GCAAGCTGATTCAAGAGGAGCAGTTGGCTAACGAAGAGGTGACTGCGGCGCGGCACGAGAGTTATTTTGCGCGTACCTAC GGCATTGATGCCGATGTCTTTGAGTTGGTGGTCAATGCGGAGAGTCCACTGGTCGGTATGACTGTAGGTGAGGCTGAAAC CATTCAGGGTGCGCCGCTGTTATTGGCATTGAAAACGGGTAACGACACGCGCTTGAGTCCGCCAGTGGACATGCGTATCT GGGTGGGGAGTGTGCTTGGTGCAATGGGGCCACGTCAGCAGGTGGCTGGTTTTGCAAAGAATCAATTGTTGAATGTGTCC TCGCGATTGCGTCACCTTGGTGACTTGTTCAACCCTGCATGTGCTGGGATTTGCGAGGTGGTGATCCCGCCCAATTCGCG TTTTATTGATAAAACCTCGACCGAGTTGCGTTTGCGCAAACAAATGGGGATTAGTTTGCTGGCGATCAATCGTGATAAGA ATGTGATTCGGGAAGACGTGCGTAATGTGCCGCTGCGTGCCGGGGACATGCTGGTATTGCACAGTCTCTGGCAGGATTTA GCGCAAGCGGCAGAAAGCCGGGATTTTGTCCCGGTCACTGATTACCCTAAGGGTGAGCAGCGTCCGCATAAGTTCAAGAT TGCGATGGCAATCTTTGCATTCACTATCTTGATTGCACTGACTGCCAAGTTGCCGGTGGCGTTGACTTTGCTGACCGGTG TGGCTTGTATGCTCGTTACTGGGGTGATCCGCATGGACGAGGCCTATACTGCAATCAGTTGGAAAACGATTTTCATGATG GCCGGATTGATCCCGCTGGGTTGGGCGATGGATAGCAGCGGCACTGCGGCTTGGGTGGCTGGACACACGATTGACCGGCT ACCGCATGGAATGCCGATATGGGCGATCGAGTTGGCTATGGCACTTTTGACGACGGCGTTTTCGCTGGTGATCAGTCACG TTGGTGCAACGATTGTGATGGTTCCGATTGCGGTTAACGTCGCGTTGGCAGCAAATGGCAATCCGACGGCATTTGGCCTG ATTGTGGCGCTAGCAGCGTCAAACAATCTGATGACGGTTTCCAATCCAGTAATTTCAATGGTGACTGGACCTGCCAATTA TCAGCCACGCGAATTATGGAAGGTGGGCGGACCATTGTCTCTGATTTATATTGTGGTGATGGTGGTGATGATTAATTTAA TGTCTCAATGGGGTGTGCTTTGA
Upstream 100 bases:
>100_bases GCGCTTTGAGAGGCGTGGCCAAAATCTGGGCCACAGAGTCTGGAATCTGCTCTACGATCGGGTCTGAATTCTGCCACTGG GATCACTACATCATCACTCC
Downstream 100 bases:
>100_bases ATGTGTCACCTGCATCGCTGAGTCATGATGGTGCGATTGTCTTTATGTAAGTTATTTTCTGGGGTTGATAACAGATATTT TCGTATCGCAGTATTTGTCA
Product: sulfur deprivation response regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 620; Mature: 620
Protein sequence:
>620_residues MDTALTLTNDMKLVLGLVGFTMAMFVWERIRADVVALIVLVVLGTTGLIPPEELFGGFSGNAVMSIIATAILGAGLERTG ALNRLAAWLLRRSHGSERRLLLITLGVAGLNSPFMQNTSVMALYMPVAARLAARTGLTLQRLLLPIAAMIVMGGALTMVG NSPLILLNDLLQSANNNLPSGIATIEPLRMFAPLPIGVALLIAALLYFFFYGDRKLIQEEQLANEEVTAARHESYFARTY GIDADVFELVVNAESPLVGMTVGEAETIQGAPLLLALKTGNDTRLSPPVDMRIWVGSVLGAMGPRQQVAGFAKNQLLNVS SRLRHLGDLFNPACAGICEVVIPPNSRFIDKTSTELRLRKQMGISLLAINRDKNVIREDVRNVPLRAGDMLVLHSLWQDL AQAAESRDFVPVTDYPKGEQRPHKFKIAMAIFAFTILIALTAKLPVALTLLTGVACMLVTGVIRMDEAYTAISWKTIFMM AGLIPLGWAMDSSGTAAWVAGHTIDRLPHGMPIWAIELAMALLTTAFSLVISHVGATIVMVPIAVNVALAANGNPTAFGL IVALAASNNLMTVSNPVISMVTGPANYQPRELWKVGGPLSLIYIVVMVVMINLMSQWGVL
Sequences:
>Translated_620_residues MDTALTLTNDMKLVLGLVGFTMAMFVWERIRADVVALIVLVVLGTTGLIPPEELFGGFSGNAVMSIIATAILGAGLERTG ALNRLAAWLLRRSHGSERRLLLITLGVAGLNSPFMQNTSVMALYMPVAARLAARTGLTLQRLLLPIAAMIVMGGALTMVG NSPLILLNDLLQSANNNLPSGIATIEPLRMFAPLPIGVALLIAALLYFFFYGDRKLIQEEQLANEEVTAARHESYFARTY GIDADVFELVVNAESPLVGMTVGEAETIQGAPLLLALKTGNDTRLSPPVDMRIWVGSVLGAMGPRQQVAGFAKNQLLNVS SRLRHLGDLFNPACAGICEVVIPPNSRFIDKTSTELRLRKQMGISLLAINRDKNVIREDVRNVPLRAGDMLVLHSLWQDL AQAAESRDFVPVTDYPKGEQRPHKFKIAMAIFAFTILIALTAKLPVALTLLTGVACMLVTGVIRMDEAYTAISWKTIFMM AGLIPLGWAMDSSGTAAWVAGHTIDRLPHGMPIWAIELAMALLTTAFSLVISHVGATIVMVPIAVNVALAANGNPTAFGL IVALAASNNLMTVSNPVISMVTGPANYQPRELWKVGGPLSLIYIVVMVVMINLMSQWGVL >Mature_620_residues MDTALTLTNDMKLVLGLVGFTMAMFVWERIRADVVALIVLVVLGTTGLIPPEELFGGFSGNAVMSIIATAILGAGLERTG ALNRLAAWLLRRSHGSERRLLLITLGVAGLNSPFMQNTSVMALYMPVAARLAARTGLTLQRLLLPIAAMIVMGGALTMVG NSPLILLNDLLQSANNNLPSGIATIEPLRMFAPLPIGVALLIAALLYFFFYGDRKLIQEEQLANEEVTAARHESYFARTY GIDADVFELVVNAESPLVGMTVGEAETIQGAPLLLALKTGNDTRLSPPVDMRIWVGSVLGAMGPRQQVAGFAKNQLLNVS SRLRHLGDLFNPACAGICEVVIPPNSRFIDKTSTELRLRKQMGISLLAINRDKNVIREDVRNVPLRAGDMLVLHSLWQDL AQAAESRDFVPVTDYPKGEQRPHKFKIAMAIFAFTILIALTAKLPVALTLLTGVACMLVTGVIRMDEAYTAISWKTIFMM AGLIPLGWAMDSSGTAAWVAGHTIDRLPHGMPIWAIELAMALLTTAFSLVISHVGATIVMVPIAVNVALAANGNPTAFGL IVALAASNNLMTVSNPVISMVTGPANYQPRELWKVGGPLSLIYIVVMVVMINLMSQWGVL
Specific function: Unknown
COG id: COG0471
COG function: function code P; Di- and tricarboxylate transporters
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 RCK C-terminal domains [H]
Homologues:
Organism=Escherichia coli, GI1788629, Length=635, Percent_Identity=27.4015748031496, Blast_Score=181, Evalue=2e-46,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001898 - InterPro: IPR006037 [H]
Pfam domain/function: PF00939 Na_sulph_symp; PF02080 TrkA_C [H]
EC number: NA
Molecular weight: Translated: 66732; Mature: 66732
Theoretical pI: Translated: 8.45; Mature: 8.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 5.0 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 5.0 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDTALTLTNDMKLVLGLVGFTMAMFVWERIRADVVALIVLVVLGTTGLIPPEELFGGFSG CCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCC NAVMSIIATAILGAGLERTGALNRLAAWLLRRSHGSERRLLLITLGVAGLNSPFMQNTSV HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCC MALYMPVAARLAARTGLTLQRLLLPIAAMIVMGGALTMVGNSPLILLNDLLQSANNNLPS EEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHCCCCCC GIATIEPLRMFAPLPIGVALLIAALLYFFFYGDRKLIQEEQLANEEVTAARHESYFARTY CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHC GIDADVFELVVNAESPLVGMTVGEAETIQGAPLLLALKTGNDTRLSPPVDMRIWVGSVLG CCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHH AMGPRQQVAGFAKNQLLNVSSRLRHLGDLFNPACAGICEVVIPPNSRFIDKTSTELRLRK CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCEEEEECCCCCCCCCCHHHHHHHH QMGISLLAINRDKNVIREDVRNVPLRAGDMLVLHSLWQDLAQAAESRDFVPVTDYPKGEQ HCCCEEEEECCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC RPHKFKIAMAIFAFTILIALTAKLPVALTLLTGVACMLVTGVIRMDEAYTAISWKTIFMM CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH AGLIPLGWAMDSSGTAAWVAGHTIDRLPHGMPIWAIELAMALLTTAFSLVISHVGATIVM HHHHHHCEEECCCCCEEEEECCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHEEE VPIAVNVALAANGNPTAFGLIVALAASNNLMTVSNPVISMVTGPANYQPRELWKVGGPLS EEEHEEEEEECCCCCHHHHHHHHHHCCCCEEEECCCEEEEEECCCCCCHHHHHHCCCHHH LIYIVVMVVMINLMSQWGVL HHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MDTALTLTNDMKLVLGLVGFTMAMFVWERIRADVVALIVLVVLGTTGLIPPEELFGGFSG CCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCC NAVMSIIATAILGAGLERTGALNRLAAWLLRRSHGSERRLLLITLGVAGLNSPFMQNTSV HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCC MALYMPVAARLAARTGLTLQRLLLPIAAMIVMGGALTMVGNSPLILLNDLLQSANNNLPS EEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHCCCCCC GIATIEPLRMFAPLPIGVALLIAALLYFFFYGDRKLIQEEQLANEEVTAARHESYFARTY CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHC GIDADVFELVVNAESPLVGMTVGEAETIQGAPLLLALKTGNDTRLSPPVDMRIWVGSVLG CCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHH AMGPRQQVAGFAKNQLLNVSSRLRHLGDLFNPACAGICEVVIPPNSRFIDKTSTELRLRK CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCEEEEECCCCCCCCCCHHHHHHHH QMGISLLAINRDKNVIREDVRNVPLRAGDMLVLHSLWQDLAQAAESRDFVPVTDYPKGEQ HCCCEEEEECCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC RPHKFKIAMAIFAFTILIALTAKLPVALTLLTGVACMLVTGVIRMDEAYTAISWKTIFMM CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH AGLIPLGWAMDSSGTAAWVAGHTIDRLPHGMPIWAIELAMALLTTAFSLVISHVGATIVM HHHHHHCEEECCCCCEEEEECCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHEEE VPIAVNVALAANGNPTAFGLIVALAASNNLMTVSNPVISMVTGPANYQPRELWKVGGPLS EEEHEEEEEECCCCCHHHHHHHHHHCCCCEEEECCCEEEEEECCCCCCHHHHHHCCCHHH LIYIVVMVVMINLMSQWGVL HHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8905231 [H]