| Definition | Xylella fastidiosa Temecula1, complete genome. |
|---|---|
| Accession | NC_004556 |
| Length | 2,519,802 |
Click here to switch to the map view.
The map label for this gene is 28199442
Identifier: 28199442
GI number: 28199442
Start: 1811738
End: 1812910
Strand: Reverse
Name: 28199442
Synonym: PD1563
Alternate gene names: NA
Gene position: 1812910-1811738 (Counterclockwise)
Preceding gene: 28199448
Following gene: 28199441
Centisome position: 71.95
GC content: 55.41
Gene sequence:
>1173_bases TTGGCGGCAATGCCTTATTTCGGGCAACAATCTCTATTCTGCATATCCCATGCCATGGAATTATCAATGCGTTACCGTTT TTTTCTGTTCATTGCTTTGTGTGCTGTGCTGCCGGTCGTTCCGGCTGTGGCGCAACGTGCCCCGCACATTCAGAGCGATG TGGCCAAGGAGCAAAGTATTTATGAGGCCGAGGTGCCGGTGAATAGTCAGGGTGACAGTGACCGGAAAGCTGGTATTGCG CGTGCGCTGTCCATTGTGCTTGGCAAGGTGACAGGTGATCGCAGTCGCAATGCAAAGTTACGTCCTGAAGTGTCTCAAGC GTTGCGCGATGCGGCTGTTTTTGTCGATAGCTATGACTACCGTCAAGATCAAGGGAGCTCGCCTGGAGGTGCGCCGACGT CTCGTACCATGCTGACGGTGCACTTCCGGCCAGATGAGGTCAATGCTCTGGTTGGTGCGCTGGCGTTGCCGTTATGGCCG CAGCCTAGACCCAAGCCCGTGTTGTGGCTGGCTATTGATGATGGCAGTGGTCCGCGTTTGGTTGGGGTGCAGCAGTCCAG GGCGGTACGCAGTGTGCTCGATCGCGCAATTGAGCGTGGCTACAGGTTAGGTTTGCCGGCTGGAAGGTCGGAGGAGCAAG CCTTGGTGACTGCCATTTGGCGGCGTGATGTGAGTGCGGTGCTGAGCGCTTCGACCCGTTACACATCTTCGATGCAGCTG GTTGGTAAATTGTATCGTTCAGGGAATGGTTGGGCTGCGGATTGGATTTTTGTGGATGGTGGTGAGCAGGTGGCGAGTTG GTCCAGTAGCAATGCGGATGCGTTGCGGGTGATGGCCGATGGTGCTGATGGTGCTGCGGACGCTTTGGTCAAGCGTTATG CCAAGGTGCCGTTAACGGGGACACCGGGGGTCTATCGGGTTGGAATTAATGGTATCCGTAGTGCTGACGATTACTTGCGT GTGTCTGCTGCATTGCAGAGGGTTCCTGTGGTACGCAGCATGATTCCTGTGAAGGCGAGTGCTGAACGTCTGGAGGTGTA TTTGGATTTGATGACGGGTATCACCGGTCTGAATCGCATGTTGGGTGGCGATAGTGCGTTGCAGCCGGTTGCTGCAGCCA CGTTGGAGTCGCCACAGAGTGAAGGTGAGCTTGTGGAGTATGTTCTGAAATGA
Upstream 100 bases:
>100_bases GCATCGCGATAGGTCAGTGGTGTCGTGCTGGGGGGGGGGGGAGTTGTCACGGGGAGGCGGCAGCTTGATCGGAAATCCTT GGTAATGTTAACAGGGTGCA
Downstream 100 bases:
>100_bases TGTTTTCGCCTGAAGTTGAAATTGCCCGGTTTCTGCGTCGTTTGAAGTGGTACGTGTTGGTTGGGGGCGTCCTGTGGATG GCGTGGTTGCTCACTCCCGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 390; Mature: 389
Protein sequence:
>390_residues MAAMPYFGQQSLFCISHAMELSMRYRFFLFIALCAVLPVVPAVAQRAPHIQSDVAKEQSIYEAEVPVNSQGDSDRKAGIA RALSIVLGKVTGDRSRNAKLRPEVSQALRDAAVFVDSYDYRQDQGSSPGGAPTSRTMLTVHFRPDEVNALVGALALPLWP QPRPKPVLWLAIDDGSGPRLVGVQQSRAVRSVLDRAIERGYRLGLPAGRSEEQALVTAIWRRDVSAVLSASTRYTSSMQL VGKLYRSGNGWAADWIFVDGGEQVASWSSSNADALRVMADGADGAADALVKRYAKVPLTGTPGVYRVGINGIRSADDYLR VSAALQRVPVVRSMIPVKASAERLEVYLDLMTGITGLNRMLGGDSALQPVAAATLESPQSEGELVEYVLK
Sequences:
>Translated_390_residues MAAMPYFGQQSLFCISHAMELSMRYRFFLFIALCAVLPVVPAVAQRAPHIQSDVAKEQSIYEAEVPVNSQGDSDRKAGIA RALSIVLGKVTGDRSRNAKLRPEVSQALRDAAVFVDSYDYRQDQGSSPGGAPTSRTMLTVHFRPDEVNALVGALALPLWP QPRPKPVLWLAIDDGSGPRLVGVQQSRAVRSVLDRAIERGYRLGLPAGRSEEQALVTAIWRRDVSAVLSASTRYTSSMQL VGKLYRSGNGWAADWIFVDGGEQVASWSSSNADALRVMADGADGAADALVKRYAKVPLTGTPGVYRVGINGIRSADDYLR VSAALQRVPVVRSMIPVKASAERLEVYLDLMTGITGLNRMLGGDSALQPVAAATLESPQSEGELVEYVLK >Mature_389_residues AAMPYFGQQSLFCISHAMELSMRYRFFLFIALCAVLPVVPAVAQRAPHIQSDVAKEQSIYEAEVPVNSQGDSDRKAGIAR ALSIVLGKVTGDRSRNAKLRPEVSQALRDAAVFVDSYDYRQDQGSSPGGAPTSRTMLTVHFRPDEVNALVGALALPLWPQ PRPKPVLWLAIDDGSGPRLVGVQQSRAVRSVLDRAIERGYRLGLPAGRSEEQALVTAIWRRDVSAVLSASTRYTSSMQLV GKLYRSGNGWAADWIFVDGGEQVASWSSSNADALRVMADGADGAADALVKRYAKVPLTGTPGVYRVGINGIRSADDYLRV SAALQRVPVVRSMIPVKASAERLEVYLDLMTGITGLNRMLGGDSALQPVAAATLESPQSEGELVEYVLK
Specific function: Unknown
COG id: COG3249
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42117; Mature: 41985
Theoretical pI: Translated: 9.16; Mature: 9.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAMPYFGQQSLFCISHAMELSMRYRFFLFIALCAVLPVVPAVAQRAPHIQSDVAKEQSI CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC YEAEVPVNSQGDSDRKAGIARALSIVLGKVTGDRSRNAKLRPEVSQALRDAAVFVDSYDY EEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC RQDQGSSPGGAPTSRTMLTVHFRPDEVNALVGALALPLWPQPRPKPVLWLAIDDGSGPRL CCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCEE VGVQQSRAVRSVLDRAIERGYRLGLPAGRSEEQALVTAIWRRDVSAVLSASTRYTSSMQL ECCHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VGKLYRSGNGWAADWIFVDGGEQVASWSSSNADALRVMADGADGAADALVKRYAKVPLTG HHHHHHCCCCEEEEEEEEECCHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCC TPGVYRVGINGIRSADDYLRVSAALQRVPVVRSMIPVKASAERLEVYLDLMTGITGLNRM CCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH LGGDSALQPVAAATLESPQSEGELVEYVLK HCCCHHHHHHHHHHHCCCCCCHHHHHHHHC >Mature Secondary Structure AAMPYFGQQSLFCISHAMELSMRYRFFLFIALCAVLPVVPAVAQRAPHIQSDVAKEQSI CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC YEAEVPVNSQGDSDRKAGIARALSIVLGKVTGDRSRNAKLRPEVSQALRDAAVFVDSYDY EEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC RQDQGSSPGGAPTSRTMLTVHFRPDEVNALVGALALPLWPQPRPKPVLWLAIDDGSGPRL CCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCEE VGVQQSRAVRSVLDRAIERGYRLGLPAGRSEEQALVTAIWRRDVSAVLSASTRYTSSMQL ECCHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VGKLYRSGNGWAADWIFVDGGEQVASWSSSNADALRVMADGADGAADALVKRYAKVPLTG HHHHHHCCCCEEEEEEEEECCHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCC TPGVYRVGINGIRSADDYLRVSAALQRVPVVRSMIPVKASAERLEVYLDLMTGITGLNRM CCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH LGGDSALQPVAAATLESPQSEGELVEYVLK HCCCHHHHHHHHHHHCCCCCCHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA