| Definition | Xylella fastidiosa Temecula1, complete genome. |
|---|---|
| Accession | NC_004556 |
| Length | 2,519,802 |
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The map label for this gene is 28199426
Identifier: 28199426
GI number: 28199426
Start: 1794446
End: 1795816
Strand: Reverse
Name: 28199426
Synonym: PD1547
Alternate gene names: NA
Gene position: 1795816-1794446 (Counterclockwise)
Preceding gene: 28199427
Following gene: 28199425
Centisome position: 71.27
GC content: 51.28
Gene sequence:
>1371_bases ATGTCAGAGTTGATTTCTTATGCGCAAAATTTTGAAGACATCATGCTCTGGCGTGCTCTCAAGCATGTTGACCGAGGATG CTATATCGATATTGGGGCGTACAGCCCAGATATTGATTCGGTGAGCAAATTGTTCTATGAGCGTGGTTGGCGCGGTATAC ATATCGAGCCTAATCAAGAGTGTGCTGACTCGTTACGTATGCGTCGGCCAGATGAGCTGGTACTTCAAGTTGCAGTGAGT GACTTGGCAGGTGTGCTGCCGTTCTTTGATATTGCCGATACTGGCTTGAGTACTACCGAACCTGATATTGCTGATACTCA CCAAGCCAATGGATTTGTGGTGCGTGACGTTAGTGTCGCTGCGATAACCTTGGATGCAGTGTTGGAGCACGTATGTGGGC GTGAAGTCCATTGGCTGAAAATCGACGTGGAAGGTAGTGAGGCTCGGGTGCTGCGCAGCTGGGTTGCTTCTCCAGTGAGG CCTTGGGTAGTGGTCGTCGAGGCGACTCGACCCATGACGGTTGAGTCGACGCATACGCAGTGGGAGGCTGCTGTTCTGGG TAAAGGTTATGTGTTCGCTTACTTCGATGGGTTGAATCGATTCTACGTGAGTGAACGCCATCCTGAGTTGCTGGCTGGGT TTGCGTGTCCTCCCAATGTGCTTGATGGTTTTAGATTGGAAAATGGTTGGTGTGCGGTGGGCGTGCGTCAATGGGATGAG TGTCAGAAGAGCTTGATAAAAAGTCAGTCTGATGCGCTTGGGGCACACGCAGAAGTTGAGGCATTGAAGGTGTCCGAGGT GGTGTTGCGCCAGGCTATTGAAGCGTATCGTGCGGATGCGATTGCTGCTTATGTAGAAGTCAAGACGTTGAAGGCATCCG AAGCCTGTTTGCAGCAGGCCATTGATGCGCATCGTGCGCAATTAGAGCATCTCATTTCGGAGGTCGATTCCCTGCGTGCC AGACTGGATGATATCCGTCGCAGCCATTCTTGGCGTGTGACGCGTCCGCTGCGAGTTTTTTCTAGAATTGTCAGATTGCT ATGTTGTTCGCCCAGGCGCGCGATAAGTAAGTGCCTCATCCTGACAATGCGCCCATTGTTACACCGTCCAGGCATTAGAG CGTTATTAAATGGCGTAGTAAAGCGTGTCCCTGTATTGCATCGACGCTTGCGTTCACTAGCTGAACAAGAGGGTTTGGTG GCACCTCCGTTGAGCACTGCTGATGTGCTGGTATCCGTACCCGTGCCGCATGTGCTGGGCCAGATGCATCGCTCCTTGGC ATGCGATGAAAAAAAAGGTACGCATTTATTGTCAAGTCGTGGACGTGAGATCTACGCACGCATGATAGGTCAGATAAACA AGGGAGAATGA
Upstream 100 bases:
>100_bases TGTTGACAGTGCAACAGTGCACGCGTGTGCTATATCTCACTCATCATTTGATAAATATTTTTAGCCTCATGTCATTTTCT TCCCGGCAGATGAATAACTG
Downstream 100 bases:
>100_bases TTGATGCGTATCGTCATGGATCTGCAGGGTGCGCAGTCTGAAGGAAGCCGCCATCGTGGTATTGGTCGCTATACCTTGTC GTTAGCCATGGCTGCAGCAC
Product: hypothetical protein
Products: NA
Alternate protein names: FkbM Family Methyltransferase; Methyltransferase FkbM; Methyltransferase; SAM-Dependent Methyltransferase; Methyltransferase FkbM Family Protein; Methyltransferase FkbM Family Domain Protein; Glycosyltransferase; Glycosyl Transferase
Number of amino acids: Translated: 456; Mature: 455
Protein sequence:
>456_residues MSELISYAQNFEDIMLWRALKHVDRGCYIDIGAYSPDIDSVSKLFYERGWRGIHIEPNQECADSLRMRRPDELVLQVAVS DLAGVLPFFDIADTGLSTTEPDIADTHQANGFVVRDVSVAAITLDAVLEHVCGREVHWLKIDVEGSEARVLRSWVASPVR PWVVVVEATRPMTVESTHTQWEAAVLGKGYVFAYFDGLNRFYVSERHPELLAGFACPPNVLDGFRLENGWCAVGVRQWDE CQKSLIKSQSDALGAHAEVEALKVSEVVLRQAIEAYRADAIAAYVEVKTLKASEACLQQAIDAHRAQLEHLISEVDSLRA RLDDIRRSHSWRVTRPLRVFSRIVRLLCCSPRRAISKCLILTMRPLLHRPGIRALLNGVVKRVPVLHRRLRSLAEQEGLV APPLSTADVLVSVPVPHVLGQMHRSLACDEKKGTHLLSSRGREIYARMIGQINKGE
Sequences:
>Translated_456_residues MSELISYAQNFEDIMLWRALKHVDRGCYIDIGAYSPDIDSVSKLFYERGWRGIHIEPNQECADSLRMRRPDELVLQVAVS DLAGVLPFFDIADTGLSTTEPDIADTHQANGFVVRDVSVAAITLDAVLEHVCGREVHWLKIDVEGSEARVLRSWVASPVR PWVVVVEATRPMTVESTHTQWEAAVLGKGYVFAYFDGLNRFYVSERHPELLAGFACPPNVLDGFRLENGWCAVGVRQWDE CQKSLIKSQSDALGAHAEVEALKVSEVVLRQAIEAYRADAIAAYVEVKTLKASEACLQQAIDAHRAQLEHLISEVDSLRA RLDDIRRSHSWRVTRPLRVFSRIVRLLCCSPRRAISKCLILTMRPLLHRPGIRALLNGVVKRVPVLHRRLRSLAEQEGLV APPLSTADVLVSVPVPHVLGQMHRSLACDEKKGTHLLSSRGREIYARMIGQINKGE >Mature_455_residues SELISYAQNFEDIMLWRALKHVDRGCYIDIGAYSPDIDSVSKLFYERGWRGIHIEPNQECADSLRMRRPDELVLQVAVSD LAGVLPFFDIADTGLSTTEPDIADTHQANGFVVRDVSVAAITLDAVLEHVCGREVHWLKIDVEGSEARVLRSWVASPVRP WVVVVEATRPMTVESTHTQWEAAVLGKGYVFAYFDGLNRFYVSERHPELLAGFACPPNVLDGFRLENGWCAVGVRQWDEC QKSLIKSQSDALGAHAEVEALKVSEVVLRQAIEAYRADAIAAYVEVKTLKASEACLQQAIDAHRAQLEHLISEVDSLRAR LDDIRRSHSWRVTRPLRVFSRIVRLLCCSPRRAISKCLILTMRPLLHRPGIRALLNGVVKRVPVLHRRLRSLAEQEGLVA PPLSTADVLVSVPVPHVLGQMHRSLACDEKKGTHLLSSRGREIYARMIGQINKGE
Specific function: Unknown
COG id: COG0500
COG function: function code QR; SAM-dependent methyltransferases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 51093; Mature: 50962
Theoretical pI: Translated: 7.39; Mature: 7.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSELISYAQNFEDIMLWRALKHVDRGCYIDIGAYSPDIDSVSKLFYERGWRGIHIEPNQE CHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEECCCCHH CADSLRMRRPDELVLQVAVSDLAGVLPFFDIADTGLSTTEPDIADTHQANGFVVRDVSVA HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECHHH AITLDAVLEHVCGREVHWLKIDVEGSEARVLRSWVASPVRPWVVVVEATRPMTVESTHTQ HHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHCCCCCCEEEEEECCCCEEECCCCCH WEAAVLGKGYVFAYFDGLNRFYVSERHPELLAGFACPPNVLDGFRLENGWCAVGVRQWDE HHHHHHCCCEEEEEECCCHHHHHCCCCHHHHCCCCCCCHHHCCCEECCCEEEECHHHHHH CQKSLIKSQSDALGAHAEVEALKVSEVVLRQAIEAYRADAIAAYVEVKTLKASEACLQQA HHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IDAHRAQLEHLISEVDSLRARLDDIRRSHSWRVTRPLRVFSRIVRLLCCSPRRAISKCLI HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHH LTMRPLLHRPGIRALLNGVVKRVPVLHRRLRSLAEQEGLVAPPLSTADVLVSVPVPHVLG HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCHHHHHH QMHRSLACDEKKGTHLLSSRGREIYARMIGQINKGE HHHHHHCCCCCCCCHHHHHCCHHHHHHHHCCCCCCC >Mature Secondary Structure SELISYAQNFEDIMLWRALKHVDRGCYIDIGAYSPDIDSVSKLFYERGWRGIHIEPNQE HHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEECCCCHH CADSLRMRRPDELVLQVAVSDLAGVLPFFDIADTGLSTTEPDIADTHQANGFVVRDVSVA HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECHHH AITLDAVLEHVCGREVHWLKIDVEGSEARVLRSWVASPVRPWVVVVEATRPMTVESTHTQ HHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHCCCCCCEEEEEECCCCEEECCCCCH WEAAVLGKGYVFAYFDGLNRFYVSERHPELLAGFACPPNVLDGFRLENGWCAVGVRQWDE HHHHHHCCCEEEEEECCCHHHHHCCCCHHHHCCCCCCCHHHCCCEECCCEEEECHHHHHH CQKSLIKSQSDALGAHAEVEALKVSEVVLRQAIEAYRADAIAAYVEVKTLKASEACLQQA HHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IDAHRAQLEHLISEVDSLRARLDDIRRSHSWRVTRPLRVFSRIVRLLCCSPRRAISKCLI HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHH LTMRPLLHRPGIRALLNGVVKRVPVLHRRLRSLAEQEGLVAPPLSTADVLVSVPVPHVLG HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCHHHHHH QMHRSLACDEKKGTHLLSSRGREIYARMIGQINKGE HHHHHHCCCCCCCCHHHHHCCHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA