| Definition | Xylella fastidiosa Temecula1, complete genome. |
|---|---|
| Accession | NC_004556 |
| Length | 2,519,802 |
Click here to switch to the map view.
The map label for this gene is 28199418
Identifier: 28199418
GI number: 28199418
Start: 1784808
End: 1786895
Strand: Reverse
Name: 28199418
Synonym: PD1539
Alternate gene names: NA
Gene position: 1786895-1784808 (Counterclockwise)
Preceding gene: 28199419
Following gene: 28199415
Centisome position: 70.91
GC content: 41.76
Gene sequence:
>2088_bases TTGTCAATAAACATAAGGTATAAGAAATATCATATGATTAAAGTGACTGCTATTTACCAGCAAGATCCTCCACCATTCCG TCAATGGCATCTGCTGATGCCTATTATGTTGCTTGCTTTAGGTTTACTTTTAATACTGGCAACACATGTTAATTACTTCC GCGGCGTGCCTGGTGATCTAGGGGATGCTCGTTTCAATGGCATTATTCTTGAGTATTTTTATAGATGGGTGAGTGGCGGT AATGAATCACTATTGAGTCCTGGATTTTTTTATCCGATGCCTGGTGCTCTTGCTTTTAGCGATAATCATTGGGGAACTGC CTGGATCTATTCGATCTATCGCATCTTAGGCTTTGATCGGTATGTTGCTTATGATCTTTGGTATTTGACAGGCTATCTGC TGAATTTCGCATCAATGCACTTTGTGCTTCGGAAATTGGGCTACTCTGTTGCTGCTGCTGCTTGGGGAGCGTTTTTCTTT ACTTTCGGGATGCCAACCGTTGCCCATCATGTAGGTCATGCTCAATTAAGCTACTGTTTTCCAGCGCCTTTGGCGCTGCT GTGTTGGCAGCGCTTTCGCCAGTTGGGTGCTCCACTGTGGTTGGGTTGGGGGGCGCTAGCAGTGGCATTGCAATTTTATG TCTCTATTTATCTCGGGTATTTCTTGTCATTGTTGTTACTCGCTTGGATAGCTGCGCAATGCTGGATTGAAAGGACATCT CCTTTAACCTGGTTTGCTGGTTTCGGTGCTTGGGTGAATTCAAACAGGAGAGATGCTTTATTTCTTTTCCTATTACTAGG TTTAGTCGTTACCAGTCTGTTAGTTTTAATGTATCCCTATGTTTTATATTCAAAATTATATGGTTTCTCGCGTGATTCGC ATGACATCTCTTCGATGTTACCGCGTATCAGCAGCTATTTTATTTCTGATATCTCGACGATATGGCATACCTTCAGTGAC CACGTAGGCAAGGATTTGCCTATGCGCCATGAGCATCAGATGTTTGTGGGTCTAGGTGCGCTTTTGTTGGTTGTACTCGC GTTAACCCTCAATAGATCGCCAATAGTGAATGTTTCTATTATATCTTTGGCGTTATTGATGTTATTTACCTTAAATATTA AAGATCAATCATTCTATCTATTATTTGCTGATTTCCCTGGAGTTAATTCGATTCGAGCTGTATCTCGTATCATTCTAATA TTAATGATTCCACTTGCGATTCTGATTGCCTCTGGAATAGATGCGGCACGCTTAAAAAGCGGAAGATGGATCATATTAGC AGCTTCACTGTGCGTAGCGCTCATGATTGAAACTATTCTAATGAAAGGCCAGTTTTATGATATTGCTGAAGCGAAAATGC GTGCCGCAACGCTCGATCAAAAGTTGCCTGCACATCTGAATGCTTCCACAGTGATTTTTGTTCCTGTCAATACATCTGAG CCATCCTTTATGACCGAGTTGGATGGTATGTTGCTTGCTCAAGAGCGTGGATTGAAGACCTTGAACGGATATTCTGGAAA TTTTCCTAATGGTTATTCAACGAATGATCCTACGCAACCGGCGTGCTTGCAGGCTGTTTCGCGTATGGAATCAGCACGGC GTTTTTATGCTGGGCACCTTGGGGAAAATTTGGATATGGGTATTTTTAAGTATTTTGTTGCATTGGATACTCCTAATTGT TCAGAGGGAGATTGGCGTGAAATTCCAAACGAGCAAATAAAGCGTATCAAGCTTGGGATTATCAATGTAAAAAAACTGTG TGATGGACGCTATGAAGTCAAGGTCAAGGTAGATAATCAAAGTGAGTATCCTTTGCTTGTATTGCCTAAGGAGCATCCAT TGCGGTTATCTTGGCAGGTCCATCCGAAGGGGACTACTCCTAAAATTGATGCTTGGGTTCCCCGTGTCGATTTTCCTCAA GGAGAGGATATTACAGCAGGTGCTCAGCGATATATTCGCTTCCCGATTAATGTTGATGAAAGTGGTGATGTGATACTTAG TGTTTCTTTGGTTTTGGAGGGGCGTGTTTGGTTACATGATCAAGGATTTTCTATTGTTCAAAAGAAATTAAATGAGAAAT ATAAATGA
Upstream 100 bases:
>100_bases ACCGTAAAAATCTTTTACCCAAGCATCGTTTATTGATGGGAAATTATACGGATACATTGACAGATCCTTTCCGTGAAAGT CGGATGAAATTAGATTATCG
Downstream 100 bases:
>100_bases GTTTGGCTTTATCTATTAGTAGTTATTTCTATTTTTATTATGTGGTTTCGTGTAAATGCAGTGGATGTTGATCTGTATCT GTATTCATTTATGCATTGGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 695; Mature: 694
Protein sequence:
>695_residues MSINIRYKKYHMIKVTAIYQQDPPPFRQWHLLMPIMLLALGLLLILATHVNYFRGVPGDLGDARFNGIILEYFYRWVSGG NESLLSPGFFYPMPGALAFSDNHWGTAWIYSIYRILGFDRYVAYDLWYLTGYLLNFASMHFVLRKLGYSVAAAAWGAFFF TFGMPTVAHHVGHAQLSYCFPAPLALLCWQRFRQLGAPLWLGWGALAVALQFYVSIYLGYFLSLLLLAWIAAQCWIERTS PLTWFAGFGAWVNSNRRDALFLFLLLGLVVTSLLVLMYPYVLYSKLYGFSRDSHDISSMLPRISSYFISDISTIWHTFSD HVGKDLPMRHEHQMFVGLGALLLVVLALTLNRSPIVNVSIISLALLMLFTLNIKDQSFYLLFADFPGVNSIRAVSRIILI LMIPLAILIASGIDAARLKSGRWIILAASLCVALMIETILMKGQFYDIAEAKMRAATLDQKLPAHLNASTVIFVPVNTSE PSFMTELDGMLLAQERGLKTLNGYSGNFPNGYSTNDPTQPACLQAVSRMESARRFYAGHLGENLDMGIFKYFVALDTPNC SEGDWREIPNEQIKRIKLGIINVKKLCDGRYEVKVKVDNQSEYPLLVLPKEHPLRLSWQVHPKGTTPKIDAWVPRVDFPQ GEDITAGAQRYIRFPINVDESGDVILSVSLVLEGRVWLHDQGFSIVQKKLNEKYK
Sequences:
>Translated_695_residues MSINIRYKKYHMIKVTAIYQQDPPPFRQWHLLMPIMLLALGLLLILATHVNYFRGVPGDLGDARFNGIILEYFYRWVSGG NESLLSPGFFYPMPGALAFSDNHWGTAWIYSIYRILGFDRYVAYDLWYLTGYLLNFASMHFVLRKLGYSVAAAAWGAFFF TFGMPTVAHHVGHAQLSYCFPAPLALLCWQRFRQLGAPLWLGWGALAVALQFYVSIYLGYFLSLLLLAWIAAQCWIERTS PLTWFAGFGAWVNSNRRDALFLFLLLGLVVTSLLVLMYPYVLYSKLYGFSRDSHDISSMLPRISSYFISDISTIWHTFSD HVGKDLPMRHEHQMFVGLGALLLVVLALTLNRSPIVNVSIISLALLMLFTLNIKDQSFYLLFADFPGVNSIRAVSRIILI LMIPLAILIASGIDAARLKSGRWIILAASLCVALMIETILMKGQFYDIAEAKMRAATLDQKLPAHLNASTVIFVPVNTSE PSFMTELDGMLLAQERGLKTLNGYSGNFPNGYSTNDPTQPACLQAVSRMESARRFYAGHLGENLDMGIFKYFVALDTPNC SEGDWREIPNEQIKRIKLGIINVKKLCDGRYEVKVKVDNQSEYPLLVLPKEHPLRLSWQVHPKGTTPKIDAWVPRVDFPQ GEDITAGAQRYIRFPINVDESGDVILSVSLVLEGRVWLHDQGFSIVQKKLNEKYK >Mature_694_residues SINIRYKKYHMIKVTAIYQQDPPPFRQWHLLMPIMLLALGLLLILATHVNYFRGVPGDLGDARFNGIILEYFYRWVSGGN ESLLSPGFFYPMPGALAFSDNHWGTAWIYSIYRILGFDRYVAYDLWYLTGYLLNFASMHFVLRKLGYSVAAAAWGAFFFT FGMPTVAHHVGHAQLSYCFPAPLALLCWQRFRQLGAPLWLGWGALAVALQFYVSIYLGYFLSLLLLAWIAAQCWIERTSP LTWFAGFGAWVNSNRRDALFLFLLLGLVVTSLLVLMYPYVLYSKLYGFSRDSHDISSMLPRISSYFISDISTIWHTFSDH VGKDLPMRHEHQMFVGLGALLLVVLALTLNRSPIVNVSIISLALLMLFTLNIKDQSFYLLFADFPGVNSIRAVSRIILIL MIPLAILIASGIDAARLKSGRWIILAASLCVALMIETILMKGQFYDIAEAKMRAATLDQKLPAHLNASTVIFVPVNTSEP SFMTELDGMLLAQERGLKTLNGYSGNFPNGYSTNDPTQPACLQAVSRMESARRFYAGHLGENLDMGIFKYFVALDTPNCS EGDWREIPNEQIKRIKLGIINVKKLCDGRYEVKVKVDNQSEYPLLVLPKEHPLRLSWQVHPKGTTPKIDAWVPRVDFPQG EDITAGAQRYIRFPINVDESGDVILSVSLVLEGRVWLHDQGFSIVQKKLNEKYK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 78672; Mature: 78541
Theoretical pI: Translated: 9.02; Mature: 9.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSINIRYKKYHMIKVTAIYQQDPPPFRQWHLLMPIMLLALGLLLILATHVNYFRGVPGDL CEEEEEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC GDARFNGIILEYFYRWVSGGNESLLSPGFFYPMPGALAFSDNHWGTAWIYSIYRILGFDR CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCHH YVAYDLWYLTGYLLNFASMHFVLRKLGYSVAAAAWGAFFFTFGMPTVAHHVGHAQLSYCF HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCHHHHHHCCCHHEEHHC PAPLALLCWQRFRQLGAPLWLGWGALAVALQFYVSIYLGYFLSLLLLAWIAAQCWIERTS CHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PLTWFAGFGAWVNSNRRDALFLFLLLGLVVTSLLVLMYPYVLYSKLYGFSRDSHDISSML CCEEEECCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH PRISSYFISDISTIWHTFSDHVGKDLPMRHEHQMFVGLGALLLVVLALTLNRSPIVNVSI HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEHHH ISLALLMLFTLNIKDQSFYLLFADFPGVNSIRAVSRIILILMIPLAILIASGIDAARLKS HHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCC GRWIILAASLCVALMIETILMKGQFYDIAEAKMRAATLDQKLPAHLNASTVIFVPVNTSE CCEEEEHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCC PSFMTELDGMLLAQERGLKTLNGYSGNFPNGYSTNDPTQPACLQAVSRMESARRFYAGHL CHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC GENLDMGIFKYFVALDTPNCSEGDWREIPNEQIKRIKLGIINVKKLCDGRYEVKVKVDNQ CCCCCHHHHHHHHEECCCCCCCCCHHHCCHHHHHHHHHHHEEHHHHCCCCEEEEEEECCC SEYPLLVLPKEHPLRLSWQVHPKGTTPKIDAWVPRVDFPQGEDITAGAQRYIRFPINVDE CCCCEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEECCCCCC SGDVILSVSLVLEGRVWLHDQGFSIVQKKLNEKYK CCCEEEEEEEEEECEEEEECCCHHHHHHHHHCCCC >Mature Secondary Structure SINIRYKKYHMIKVTAIYQQDPPPFRQWHLLMPIMLLALGLLLILATHVNYFRGVPGDL EEEEEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC GDARFNGIILEYFYRWVSGGNESLLSPGFFYPMPGALAFSDNHWGTAWIYSIYRILGFDR CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCHH YVAYDLWYLTGYLLNFASMHFVLRKLGYSVAAAAWGAFFFTFGMPTVAHHVGHAQLSYCF HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCHHHHHHCCCHHEEHHC PAPLALLCWQRFRQLGAPLWLGWGALAVALQFYVSIYLGYFLSLLLLAWIAAQCWIERTS CHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PLTWFAGFGAWVNSNRRDALFLFLLLGLVVTSLLVLMYPYVLYSKLYGFSRDSHDISSML CCEEEECCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH PRISSYFISDISTIWHTFSDHVGKDLPMRHEHQMFVGLGALLLVVLALTLNRSPIVNVSI HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEHHH ISLALLMLFTLNIKDQSFYLLFADFPGVNSIRAVSRIILILMIPLAILIASGIDAARLKS HHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCC GRWIILAASLCVALMIETILMKGQFYDIAEAKMRAATLDQKLPAHLNASTVIFVPVNTSE CCEEEEHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCC PSFMTELDGMLLAQERGLKTLNGYSGNFPNGYSTNDPTQPACLQAVSRMESARRFYAGHL CHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC GENLDMGIFKYFVALDTPNCSEGDWREIPNEQIKRIKLGIINVKKLCDGRYEVKVKVDNQ CCCCCHHHHHHHHEECCCCCCCCCHHHCCHHHHHHHHHHHEEHHHHCCCCEEEEEEECCC SEYPLLVLPKEHPLRLSWQVHPKGTTPKIDAWVPRVDFPQGEDITAGAQRYIRFPINVDE CCCCEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEECCCCCC SGDVILSVSLVLEGRVWLHDQGFSIVQKKLNEKYK CCCEEEEEEEEEECEEEEECCCHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA