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The map label for this gene is yafV [H]

Identifier: 28199354

GI number: 28199354

Start: 1716882

End: 1717694

Strand: Reverse

Name: yafV [H]

Synonym: PD1473

Alternate gene names: 28199354

Gene position: 1717694-1716882 (Counterclockwise)

Preceding gene: 28199355

Following gene: 28199353

Centisome position: 68.17

GC content: 53.75

Gene sequence:

>813_bases
GTGATGCAGGATTTGCGTATTTCTCTTGTTCAAGGTGAGACGCGGTGGCATGACGCAGCGGGTAATCGGCATTACTACGG
TGCGCTGTTGGCTCCTCTGGCGGGTGTCACGGATGTGGCGGTGTTGCCTGAGACGTTTACCAGTGGTTTTTCTAACGATG
TCCTTGAGGATGTGGAGGGGATGGATGGTCCGACGGTCGCTTGGGTTCTTGAGCAGGCGGCGTCTTTAGAGGCTGTGGTG
ACGGGAAGTGTGCGGTTATGTACGCCTGAGGGGGTATTCAATCGGTTGTTATGGGCGACTCCAGAGGGACGGTTGGAGAC
GTACGATAAGCGGCATTTGTTTCGTTATGCGAACGAGCATCAGCGTTATGTCGCTGGGTGTAGGCGTTTGGTTGTGGAAT
GGAAGGGCTGGAGAATCAATCCGCAGATTTGTTATGACTTGCGTTTCCCCGTGTTTTGCAGGAATCGCTATGACGTTGAG
CGTTCTGGCCAGCTTGATTTTGATGTGCAGCTTTTTGTTGCCAACTGGCCGTCGGTACGGGCTGAGGCTTGGAAAACGCT
GTTGCGGGCGCGTGCGATTGAGAATTTATGTTATGTCGTTGGGGTCAATCGGGTGGGGGTGGATGGTAATCAATTGCATT
ATGTGGGGGATAGTGCGGTGATTGATGTCTTTGGTCAGGCTCAAGTGGAGATCCGCGGGCGTGAACAGGTGGTGACTACG
GTCATTTCGGGGCAGGTGTTGGCAGAGCACCGCGCTCGTTTTCCGGCAATGCTGGATGCAGATGCTTTTGCGTTGGAAAT
GGGCGGGTATTAA

Upstream 100 bases:

>100_bases
GCTCCAGCGGGGCAGCGTTTGGTGCGGTTGTGTTTCGCTAAAAATGATATGACGTTGGGGGCGGCGATCGAGCGGTTACA
ACGGCTTTGATGTGGAGGAT

Downstream 100 bases:

>100_bases
TCGGTGATTAGTTGCTGAATGGGCACTTGGGGGTATCTCATCTCCTAGGGGGATGGGCTGCTACAGTCAGCGCCATTGTT
CATTTGGAATACCGATCATG

Product: hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MMQDLRISLVQGETRWHDAAGNRHYYGALLAPLAGVTDVAVLPETFTSGFSNDVLEDVEGMDGPTVAWVLEQAASLEAVV
TGSVRLCTPEGVFNRLLWATPEGRLETYDKRHLFRYANEHQRYVAGCRRLVVEWKGWRINPQICYDLRFPVFCRNRYDVE
RSGQLDFDVQLFVANWPSVRAEAWKTLLRARAIENLCYVVGVNRVGVDGNQLHYVGDSAVIDVFGQAQVEIRGREQVVTT
VISGQVLAEHRARFPAMLDADAFALEMGGY

Sequences:

>Translated_270_residues
MMQDLRISLVQGETRWHDAAGNRHYYGALLAPLAGVTDVAVLPETFTSGFSNDVLEDVEGMDGPTVAWVLEQAASLEAVV
TGSVRLCTPEGVFNRLLWATPEGRLETYDKRHLFRYANEHQRYVAGCRRLVVEWKGWRINPQICYDLRFPVFCRNRYDVE
RSGQLDFDVQLFVANWPSVRAEAWKTLLRARAIENLCYVVGVNRVGVDGNQLHYVGDSAVIDVFGQAQVEIRGREQVVTT
VISGQVLAEHRARFPAMLDADAFALEMGGY
>Mature_270_residues
MMQDLRISLVQGETRWHDAAGNRHYYGALLAPLAGVTDVAVLPETFTSGFSNDVLEDVEGMDGPTVAWVLEQAASLEAVV
TGSVRLCTPEGVFNRLLWATPEGRLETYDKRHLFRYANEHQRYVAGCRRLVVEWKGWRINPQICYDLRFPVFCRNRYDVE
RSGQLDFDVQLFVANWPSVRAEAWKTLLRARAIENLCYVVGVNRVGVDGNQLHYVGDSAVIDVFGQAQVEIRGREQVVTT
VISGQVLAEHRARFPAMLDADAFALEMGGY

Specific function: Unknown

COG id: COG0388

COG function: function code R; Predicted amidohydrolase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CN hydrolase domain [H]

Homologues:

Organism=Escherichia coli, GI1786412, Length=265, Percent_Identity=44.5283018867925, Blast_Score=210, Evalue=7e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003010
- InterPro:   IPR001110 [H]

Pfam domain/function: PF00795 CN_hydrolase [H]

EC number: 3.5.-.- [C]

Molecular weight: Translated: 30411; Mature: 30411

Theoretical pI: Translated: 5.38; Mature: 5.38

Prosite motif: PS50263 CN_HYDROLASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMQDLRISLVQGETRWHDAAGNRHYYGALLAPLAGVTDVAVLPETFTSGFSNDVLEDVEG
CCCCEEEEEEECCCCEECCCCCCEEHHHHHHHHCCCCHHHCCCHHHHCCCCHHHHHHHCC
MDGPTVAWVLEQAASLEAVVTGSVRLCTPEGVFNRLLWATPEGRLETYDKRHLFRYANEH
CCCCHHHHHHHHHHCEEEEEECCEEEECCHHHHHHHEECCCCCCCHHHHHHHHHHHHHHH
QRYVAGCRRLVVEWKGWRINPQICYDLRFPVFCRNRYDVERSGQLDFDVQLFVANWPSVR
HHHHHHHHHHHEEECCEEECCEEEEEECCCEEECCCCCCCCCCCCCEEEEEEEECCCCHH
AEAWKTLLRARAIENLCYVVGVNRVGVDGNQLHYVGDSAVIDVFGQAQVEIRGREQVVTT
HHHHHHHHHHHHHHHEEEEEECCEECCCCCEEEEECCCEEEEECCCEEEEECCCHHHHHH
VISGQVLAEHRARFPAMLDADAFALEMGGY
HHCCHHHHHHHHCCCCEECCCCEEEECCCC
>Mature Secondary Structure
MMQDLRISLVQGETRWHDAAGNRHYYGALLAPLAGVTDVAVLPETFTSGFSNDVLEDVEG
CCCCEEEEEEECCCCEECCCCCCEEHHHHHHHHCCCCHHHCCCHHHHCCCCHHHHHHHCC
MDGPTVAWVLEQAASLEAVVTGSVRLCTPEGVFNRLLWATPEGRLETYDKRHLFRYANEH
CCCCHHHHHHHHHHCEEEEEECCEEEECCHHHHHHHEECCCCCCCHHHHHHHHHHHHHHH
QRYVAGCRRLVVEWKGWRINPQICYDLRFPVFCRNRYDVERSGQLDFDVQLFVANWPSVR
HHHHHHHHHHHEEECCEEECCEEEEEECCCEEECCCCCCCCCCCCCEEEEEEEECCCCHH
AEAWKTLLRARAIENLCYVVGVNRVGVDGNQLHYVGDSAVIDVFGQAQVEIRGREQVVTT
HHHHHHHHHHHHHHHEEEEEECCEECCCCCEEEEECCCEEEEECCCEEEEECCCHHHHHH
VISGQVLAEHRARFPAMLDADAFALEMGGY
HHCCHHHHHHHHCCCCEECCCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]