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The map label for this gene is gumB [C]

Identifier: 28199280

GI number: 28199280

Start: 1620980

End: 1621633

Strand: Reverse

Name: gumB [C]

Synonym: PD1396

Alternate gene names: 28199280

Gene position: 1621633-1620980 (Counterclockwise)

Preceding gene: 28199281

Following gene: 28199279

Centisome position: 64.36

GC content: 49.39

Gene sequence:

>654_bases
ATGTGTGCGGTTACTCTGATGGCTTGCAATACCGCACCGCATTCTCTGGCCTCTTCTCTCCCGGTACCGGATGCACTGCT
TTTTCCACAGGTGCAGCCTGAATACAAAGTTGCTCCTGGTGACTTATTGTTGATCAAGGTATTCCAAGTCGATGATCTGG
AACGTCAGGTCCGTGTGGACAACACAGGGCGTATTACCCTGCCATTGTTAGGAAGCATTGAAGTATCCAATAAAGGTGCT
GCTGAGTTGGAAACTCTGATAGCCAATCGTTACCGCAGTGACTATCTGCAGGATCCTCAGGTTTCTGTTTTTATCCAAGA
AGCGAATGCACGCCGTGTCACCGTGACTGGTGCAGTGACCGAGCCGGGGACCTATCCATTGATCGGTAGCAATCTGACAT
TACAGCAAGTGATTGCTCAGGCTAAAGGTATAAACACGCTGGCGAGTCTTCAAAACGTGGTTGTATTCCGCACTGTCAAA
GGGCAGAAGATGTTGGCGCGCTTTGATTTGGCACGTATTGAGCGTGGCAAGGATCCTGATCCTGAGATATATCCTGGTGA
TCTGGTTGTTGTTTACCGTTCCGACATGCGCTTGTTTTTGCGCACTCTGGTTGAAATTACCCCCTTCGTTATGGTCTGGC
GCGCGTATCGATAA

Upstream 100 bases:

>100_bases
CGATATGGGGAGCCATTACTCGATTTTTCCCTACAAGAGGTTCATGTCATCGCGTATGAAATTAACAGGACGTTTCAACT
CGATAATGAGTTTGTCCTTA

Downstream 100 bases:

>100_bases
CTATGGATTATCCCAATCAAACTTCTTCCGCTTTGTTTCACTCCTCAGAACCATTGGGTCTGAATCTTGTTGATTATTTA
CGTGTATTGCTCAGTCAATA

Product: GumB protein

Products: NA

Alternate protein names: ORF4 [H]

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MCAVTLMACNTAPHSLASSLPVPDALLFPQVQPEYKVAPGDLLLIKVFQVDDLERQVRVDNTGRITLPLLGSIEVSNKGA
AELETLIANRYRSDYLQDPQVSVFIQEANARRVTVTGAVTEPGTYPLIGSNLTLQQVIAQAKGINTLASLQNVVVFRTVK
GQKMLARFDLARIERGKDPDPEIYPGDLVVVYRSDMRLFLRTLVEITPFVMVWRAYR

Sequences:

>Translated_217_residues
MCAVTLMACNTAPHSLASSLPVPDALLFPQVQPEYKVAPGDLLLIKVFQVDDLERQVRVDNTGRITLPLLGSIEVSNKGA
AELETLIANRYRSDYLQDPQVSVFIQEANARRVTVTGAVTEPGTYPLIGSNLTLQQVIAQAKGINTLASLQNVVVFRTVK
GQKMLARFDLARIERGKDPDPEIYPGDLVVVYRSDMRLFLRTLVEITPFVMVWRAYR
>Mature_217_residues
MCAVTLMACNTAPHSLASSLPVPDALLFPQVQPEYKVAPGDLLLIKVFQVDDLERQVRVDNTGRITLPLLGSIEVSNKGA
AELETLIANRYRSDYLQDPQVSVFIQEANARRVTVTGAVTEPGTYPLIGSNLTLQQVIAQAKGINTLASLQNVVVFRTVK
GQKMLARFDLARIERGKDPDPEIYPGDLVVVYRSDMRLFLRTLVEITPFVMVWRAYR

Specific function: May be involved in polysaccharide transport [H]

COG id: COG1596

COG function: function code M; Periplasmic protein involved in polysaccharide export

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the BexD/CtrA/VexA family [H]

Homologues:

Organism=Escherichia coli, GI1788376, Length=181, Percent_Identity=28.7292817679558, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003715
- InterPro:   IPR019554 [H]

Pfam domain/function: PF02563 Poly_export; PF10531 SLBB [H]

EC number: NA

Molecular weight: Translated: 24113; Mature: 24113

Theoretical pI: Translated: 8.18; Mature: 8.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCAVTLMACNTAPHSLASSLPVPDALLFPQVQPEYKVAPGDLLLIKVFQVDDLERQVRVD
CCEEEEEEECCCCHHHHHCCCCCCCEECCCCCCCCEECCCCEEEEEEECCCCCCHHEEEC
NTGRITLPLLGSIEVSNKGAAELETLIANRYRSDYLQDPQVSVFIQEANARRVTVTGAVT
CCCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEEEEEEEE
EPGTYPLIGSNLTLQQVIAQAKGINTLASLQNVVVFRTVKGQKMLARFDLARIERGKDPD
CCCCCCEECCCCHHHHHHHHHCCCHHHHHHHHEEEEEECCCCHHHHHHHHHHHHCCCCCC
PEIYPGDLVVVYRSDMRLFLRTLVEITPFVMVWRAYR
CCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MCAVTLMACNTAPHSLASSLPVPDALLFPQVQPEYKVAPGDLLLIKVFQVDDLERQVRVD
CCEEEEEEECCCCHHHHHCCCCCCCEECCCCCCCCEECCCCEEEEEEECCCCCCHHEEEC
NTGRITLPLLGSIEVSNKGAAELETLIANRYRSDYLQDPQVSVFIQEANARRVTVTGAVT
CCCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEEEEEEEE
EPGTYPLIGSNLTLQQVIAQAKGINTLASLQNVVVFRTVKGQKMLARFDLARIERGKDPD
CCCCCCEECCCCHHHHHHHHHCCCHHHHHHHHEEEEEECCCCHHHHHHHHHHHHCCCCCC
PEIYPGDLVVVYRSDMRLFLRTLVEITPFVMVWRAYR
CCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7896702 [H]