| Definition | Xylella fastidiosa Temecula1, complete genome. |
|---|---|
| Accession | NC_004556 |
| Length | 2,519,802 |
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The map label for this gene is 28198883
Identifier: 28198883
GI number: 28198883
Start: 1179227
End: 1180387
Strand: Reverse
Name: 28198883
Synonym: PD0984
Alternate gene names: NA
Gene position: 1180387-1179227 (Counterclockwise)
Preceding gene: 28198884
Following gene: 28198880
Centisome position: 46.84
GC content: 57.02
Gene sequence:
>1161_bases ATGACGCGGGAATGGGTCACGTTGAATACGGCGCTGCACGCCGATGCGCTGGAGCCGATGCATCGTCTGGAACAGGTGTT GAACGTGCGCGCCAAGGTACGTGATGCGCTGGCCTGGGCCCGGTTGTACGGGGGTGCGGTGCTGTTTATCAATGTGCATG GGCAAGACCCGTGCTTGCCGTTTGATCCGGCCTCGGTCATGCCGGGGACCAGGCTATCGCTGACGGTGTTGGATCGCTGG CGGGTGGCGCTGGGCAGTGGTCAGATGGACCAGGACCCCTTGAGTGAGACCTACGGGCAACCGCGCTGTTATCAGATTGC CGGATCGGTGGAGCGGGTGGACCATTCACGGATGATTGCTTTTTCTGGGGCGGAACTGCCCTGGGAGGCATTCAGGGGGA ACGGCTACTGGCATGACTCGGTATTGCAGGCCATGTATAACGCGCTCAGCCGCTATGACACCGCGACCCAGGGCACGGCG TCGATGTTTTTTGAGGCGGTGGTGGATGTATTGCGGATCTCTGGACTCAGCGACACGCTCGCCTCAGACCAAGGGACGCA AGAGGTACACAAGCGCTTTCAGTTAGCGGCCATGATGAAATCATTCAATCGGATGCTGCTGCTGGATGCTAAGGATGAAT ACACCCAAAAAACCAATCACTTTGCGGGTGTGAAGGATGTGATTGAGCAATTCATGATGGATATTTCAGGGGCGGCGGAT ATTCCGGCAACCCGGTTGTTTGGTCAGTCCCCCCAAGGCATGAACGCCACCGGTGACAGTGATATTCGCAATTATTACGA CCGCATCAAGGCGCAGCAGGAGGATGAGCTGCGGCCTGTGCTGAGGGTGTTGTATGAGGTGCTGTTTCGGGCCTCTGTGG GGGAGTGTCCTCATGATCTGGAGATCCAGTTCAATTCGCTATGGCAGATGAGCCAGACAGAACAGGCAAGCATTGAGAAG CTGCGCGCCGAGCGTGATCAGATTTACCTGGCGCATGGTGTGATCGGTCCAGACGTGCCCTGTGCTGAGCTGCTGGAACA AAAAACTTATTCAAAGATCACCGAACGCGATGTGACGCTGGCGGCGGAACTGTCTCAGGCGATGGAGCCTCCAGATGTGT GGCCATTGGTGGAAACGACAGCATCGGCTTCCAATACATAG
Upstream 100 bases:
>100_bases CCTGTGTATGTCCATATTTATGTCCATGTGAGAAATGCGATTCATTGAAACACAGTAAAAGCAGGGCTTTTCAGTGATTT TTTAGATTCCGGCCACCGAC
Downstream 100 bases:
>100_bases GCTGCGATTGGAATCATGCAATGGTCAGATAAAAAACCGGCGAAGCACTCACGCCGCTTTCAGTACGCGCATTTCCACAT GCATCCCAGCCGCCGCAGCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 386; Mature: 385
Protein sequence:
>386_residues MTREWVTLNTALHADALEPMHRLEQVLNVRAKVRDALAWARLYGGAVLFINVHGQDPCLPFDPASVMPGTRLSLTVLDRW RVALGSGQMDQDPLSETYGQPRCYQIAGSVERVDHSRMIAFSGAELPWEAFRGNGYWHDSVLQAMYNALSRYDTATQGTA SMFFEAVVDVLRISGLSDTLASDQGTQEVHKRFQLAAMMKSFNRMLLLDAKDEYTQKTNHFAGVKDVIEQFMMDISGAAD IPATRLFGQSPQGMNATGDSDIRNYYDRIKAQQEDELRPVLRVLYEVLFRASVGECPHDLEIQFNSLWQMSQTEQASIEK LRAERDQIYLAHGVIGPDVPCAELLEQKTYSKITERDVTLAAELSQAMEPPDVWPLVETTASASNT
Sequences:
>Translated_386_residues MTREWVTLNTALHADALEPMHRLEQVLNVRAKVRDALAWARLYGGAVLFINVHGQDPCLPFDPASVMPGTRLSLTVLDRW RVALGSGQMDQDPLSETYGQPRCYQIAGSVERVDHSRMIAFSGAELPWEAFRGNGYWHDSVLQAMYNALSRYDTATQGTA SMFFEAVVDVLRISGLSDTLASDQGTQEVHKRFQLAAMMKSFNRMLLLDAKDEYTQKTNHFAGVKDVIEQFMMDISGAAD IPATRLFGQSPQGMNATGDSDIRNYYDRIKAQQEDELRPVLRVLYEVLFRASVGECPHDLEIQFNSLWQMSQTEQASIEK LRAERDQIYLAHGVIGPDVPCAELLEQKTYSKITERDVTLAAELSQAMEPPDVWPLVETTASASNT >Mature_385_residues TREWVTLNTALHADALEPMHRLEQVLNVRAKVRDALAWARLYGGAVLFINVHGQDPCLPFDPASVMPGTRLSLTVLDRWR VALGSGQMDQDPLSETYGQPRCYQIAGSVERVDHSRMIAFSGAELPWEAFRGNGYWHDSVLQAMYNALSRYDTATQGTAS MFFEAVVDVLRISGLSDTLASDQGTQEVHKRFQLAAMMKSFNRMLLLDAKDEYTQKTNHFAGVKDVIEQFMMDISGAADI PATRLFGQSPQGMNATGDSDIRNYYDRIKAQQEDELRPVLRVLYEVLFRASVGECPHDLEIQFNSLWQMSQTEQASIEKL RAERDQIYLAHGVIGPDVPCAELLEQKTYSKITERDVTLAAELSQAMEPPDVWPLVETTASASNT
Specific function: Unknown
COG id: COG3567
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006445 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43300; Mature: 43169
Theoretical pI: Translated: 4.74; Mature: 4.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTREWVTLNTALHADALEPMHRLEQVLNVRAKVRDALAWARLYGGAVLFINVHGQDPCLP CCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCC FDPASVMPGTRLSLTVLDRWRVALGSGQMDQDPLSETYGQPRCYQIAGSVERVDHSRMIA CCCHHCCCCCCEEEEEHHHHHHHHCCCCCCCCCHHHHCCCCEEEHHHCHHHHHCCCCEEE FSGAELPWEAFRGNGYWHDSVLQAMYNALSRYDTATQGTASMFFEAVVDVLRISGLSDTL ECCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHH ASDQGTQEVHKRFQLAAMMKSFNRMLLLDAKDEYTQKTNHFAGVKDVIEQFMMDISGAAD HCCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHCCCCHHHHHHHHHHHHCCCCC IPATRLFGQSPQGMNATGDSDIRNYYDRIKAQQEDELRPVLRVLYEVLFRASVGECPHDL CCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC EIQFNSLWQMSQTEQASIEKLRAERDQIYLAHGVIGPDVPCAELLEQKTYSKITERDVTL EEEHHHHHHHCHHHHHHHHHHHHHHHCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH AAELSQAMEPPDVWPLVETTASASNT HHHHHHHCCCCCCCHHHHHCCCCCCC >Mature Secondary Structure TREWVTLNTALHADALEPMHRLEQVLNVRAKVRDALAWARLYGGAVLFINVHGQDPCLP CCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCC FDPASVMPGTRLSLTVLDRWRVALGSGQMDQDPLSETYGQPRCYQIAGSVERVDHSRMIA CCCHHCCCCCCEEEEEHHHHHHHHCCCCCCCCCHHHHCCCCEEEHHHCHHHHHCCCCEEE FSGAELPWEAFRGNGYWHDSVLQAMYNALSRYDTATQGTASMFFEAVVDVLRISGLSDTL ECCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHH ASDQGTQEVHKRFQLAAMMKSFNRMLLLDAKDEYTQKTNHFAGVKDVIEQFMMDISGAAD HCCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHCCCCHHHHHHHHHHHHCCCCC IPATRLFGQSPQGMNATGDSDIRNYYDRIKAQQEDELRPVLRVLYEVLFRASVGECPHDL CCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC EIQFNSLWQMSQTEQASIEKLRAERDQIYLAHGVIGPDVPCAELLEQKTYSKITERDVTL EEEHHHHHHHCHHHHHHHHHHHHHHHCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH AAELSQAMEPPDVWPLVETTASASNT HHHHHHHCCCCCCCHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]