| Definition | Xylella fastidiosa Temecula1, complete genome. |
|---|---|
| Accession | NC_004556 |
| Length | 2,519,802 |
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The map label for this gene is 28198858
Identifier: 28198858
GI number: 28198858
Start: 1162867
End: 1164012
Strand: Reverse
Name: 28198858
Synonym: PD0959
Alternate gene names: NA
Gene position: 1164012-1162867 (Counterclockwise)
Preceding gene: 28198859
Following gene: 28198857
Centisome position: 46.19
GC content: 56.81
Gene sequence:
>1146_bases ATGGGAAAAGTCACCACCAGCGGATACGAAGCCGAGCGGCTGGATACGATCATTGCCCGCTTGCAAGAAGGCTTCCGCTG GATTTACGGCAACGATATCAACGTTGATCCAGACAGCCCCGATGGCCAGTTGATTGGCCTGATTGCACAGATCAAAGCCG ATCTGGAAGAACTGGGCACGGACATCCACCGGCAACTGGACCCGGATTACGCCAGTGGCGCATGGCTAGAACAACGCGTG GCCTATGCGGGCCTCACCCGCAGGCGAGCCAGCTACAGCTACTTACGCAATGTCACTTTGACCGGCACACCCGATGCCTT GATCCCGGCAGGGTATGTTGTTTCAGATCCCAATCGCTGCCGCTGGCAGCTCGTGTCACCCGTGCGCCTGGATGCCACCG GCCACGCACATGCAGACTTTCGCAATGATACCTTAGGCCGTTTTGACGTCCCGGCACACACCGCCCTGACCATTGAAACC GTGGCCCTGGGCTGGGACCGGGCCATCACCACCGAAGACGCCGAGGCAGGGGCAGAAGAAGAGCACGATGCGGCCCTGCG CGCCCGCTTCTTTAAAAGCCGTGCCAAGACATCCACCAACAATGCTGACAGCATCCAGGCCACGCTCTGGGGGCTACCCG ACGTGCGCCACGTCGTCTGCTTAGAAAACTTCACCGATACTGTGGATGCTGCGGGAGTCCCCGCCCACGGCATTAACGTC ATTGTGGAGGGGGGCCGGGATGACGCCATTGCTGAAGTGATCTATCACCATAAAACACTCGGTACAAACATGCGTGGTGA GGTACGGGTACAGATTAAAAACAAACACGGCCAACCTAGAGAGATCTATTTTGACCGTCCAACGATGGTCCGTTGCGCCG CCCGCATCGAAGTAGAGCGCGATAGCAGCACTTCCGGTATTGATACCCATGGGATCAAACAGGCATTGGCCGAGCGCTCC TTTCTGATTGGCGAGCACGTCCACCGCAGCCGACTGTATACCCAAATTAATAGCGTCCCAGGCTTTTGGGTGACATCGCT GATGATCGGTAAAGCAGGCCAAGCGTTGTCTGAGCAAAATATTCCTATCGACGTGAGAAGCATGGCGCGCTTTGCAATGA ATGATCTTCAGGTCATTGTGCGATGA
Upstream 100 bases:
>100_bases GGCGATCTAATTCGTGTTGATCATTTCGGAGATGCCTTTTTGATCAAGAAAAGATATCCAATGAACGACCACACCCGCCA CCTTGGCGATTGAGTAAACC
Downstream 100 bases:
>100_bases GCTACGCGGACCTGTTGATCTGGCAATACAAGGGCCAACCCAGGGCCACCGCCACCGCTGCATTGATCAGCGATACCTTC AGCACCACCTGGAACGGCTT
Product: hypothetical protein
Products: NA
Alternate protein names: Phage Protein; Phage Related-Protein; Phage Mu
Number of amino acids: Translated: 381; Mature: 380
Protein sequence:
>381_residues MGKVTTSGYEAERLDTIIARLQEGFRWIYGNDINVDPDSPDGQLIGLIAQIKADLEELGTDIHRQLDPDYASGAWLEQRV AYAGLTRRRASYSYLRNVTLTGTPDALIPAGYVVSDPNRCRWQLVSPVRLDATGHAHADFRNDTLGRFDVPAHTALTIET VALGWDRAITTEDAEAGAEEEHDAALRARFFKSRAKTSTNNADSIQATLWGLPDVRHVVCLENFTDTVDAAGVPAHGINV IVEGGRDDAIAEVIYHHKTLGTNMRGEVRVQIKNKHGQPREIYFDRPTMVRCAARIEVERDSSTSGIDTHGIKQALAERS FLIGEHVHRSRLYTQINSVPGFWVTSLMIGKAGQALSEQNIPIDVRSMARFAMNDLQVIVR
Sequences:
>Translated_381_residues MGKVTTSGYEAERLDTIIARLQEGFRWIYGNDINVDPDSPDGQLIGLIAQIKADLEELGTDIHRQLDPDYASGAWLEQRV AYAGLTRRRASYSYLRNVTLTGTPDALIPAGYVVSDPNRCRWQLVSPVRLDATGHAHADFRNDTLGRFDVPAHTALTIET VALGWDRAITTEDAEAGAEEEHDAALRARFFKSRAKTSTNNADSIQATLWGLPDVRHVVCLENFTDTVDAAGVPAHGINV IVEGGRDDAIAEVIYHHKTLGTNMRGEVRVQIKNKHGQPREIYFDRPTMVRCAARIEVERDSSTSGIDTHGIKQALAERS FLIGEHVHRSRLYTQINSVPGFWVTSLMIGKAGQALSEQNIPIDVRSMARFAMNDLQVIVR >Mature_380_residues GKVTTSGYEAERLDTIIARLQEGFRWIYGNDINVDPDSPDGQLIGLIAQIKADLEELGTDIHRQLDPDYASGAWLEQRVA YAGLTRRRASYSYLRNVTLTGTPDALIPAGYVVSDPNRCRWQLVSPVRLDATGHAHADFRNDTLGRFDVPAHTALTIETV ALGWDRAITTEDAEAGAEEEHDAALRARFFKSRAKTSTNNADSIQATLWGLPDVRHVVCLENFTDTVDAAGVPAHGINVI VEGGRDDAIAEVIYHHKTLGTNMRGEVRVQIKNKHGQPREIYFDRPTMVRCAARIEVERDSSTSGIDTHGIKQALAERSF LIGEHVHRSRLYTQINSVPGFWVTSLMIGKAGQALSEQNIPIDVRSMARFAMNDLQVIVR
Specific function: Unknown
COG id: COG3299
COG function: function code S; Uncharacterized homolog of phage Mu protein gp47
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42237; Mature: 42106
Theoretical pI: Translated: 6.19; Mature: 6.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGKVTTSGYEAERLDTIIARLQEGFRWIYGNDINVDPDSPDGQLIGLIAQIKADLEELGT CCCCCCCCCCHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH DIHRQLDPDYASGAWLEQRVAYAGLTRRRASYSYLRNVTLTGTPDALIPAGYVVSDPNRC HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCEEECCCCCC RWQLVSPVRLDATGHAHADFRNDTLGRFDVPAHTALTIETVALGWDRAITTEDAEAGAEE EEEEECCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCHHCCCCC EHDAALRARFFKSRAKTSTNNADSIQATLWGLPDVRHVVCLENFTDTVDAAGVPAHGINV HHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHEEEHHCCCCHHHCCCCCCCCCEE IVEGGRDDAIAEVIYHHKTLGTNMRGEVRVQIKNKHGQPREIYFDRPTMVRCAARIEVER EEECCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCEEEECCCHHHEEEEEEEEEC DSSTSGIDTHGIKQALAERSFLIGEHVHRSRLYTQINSVPGFWVTSLMIGKAGQALSEQN CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHCCCC IPIDVRSMARFAMNDLQVIVR CCEEHHHHHHHHHHHHHHHCC >Mature Secondary Structure GKVTTSGYEAERLDTIIARLQEGFRWIYGNDINVDPDSPDGQLIGLIAQIKADLEELGT CCCCCCCCCHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH DIHRQLDPDYASGAWLEQRVAYAGLTRRRASYSYLRNVTLTGTPDALIPAGYVVSDPNRC HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCEEECCCCCC RWQLVSPVRLDATGHAHADFRNDTLGRFDVPAHTALTIETVALGWDRAITTEDAEAGAEE EEEEECCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCHHCCCCC EHDAALRARFFKSRAKTSTNNADSIQATLWGLPDVRHVVCLENFTDTVDAAGVPAHGINV HHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHEEEHHCCCCHHHCCCCCCCCCEE IVEGGRDDAIAEVIYHHKTLGTNMRGEVRVQIKNKHGQPREIYFDRPTMVRCAARIEVER EEECCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCEEEECCCHHHEEEEEEEEEC DSSTSGIDTHGIKQALAERSFLIGEHVHRSRLYTQINSVPGFWVTSLMIGKAGQALSEQN CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHCCCC IPIDVRSMARFAMNDLQVIVR CCEEHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA