| Definition | Xylella fastidiosa Temecula1, complete genome. |
|---|---|
| Accession | NC_004556 |
| Length | 2,519,802 |
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The map label for this gene is 28198856
Identifier: 28198856
GI number: 28198856
Start: 1161143
End: 1162306
Strand: Reverse
Name: 28198856
Synonym: PD0957
Alternate gene names: NA
Gene position: 1162306-1161143 (Counterclockwise)
Preceding gene: 28198857
Following gene: 28198855
Centisome position: 46.13
GC content: 56.96
Gene sequence:
>1164_bases ATGACAGAACACTACTTCCGTACCCCCTTTGCCCACCAAGGGGACATGATCCACGTGCCCGAAGCCAAAGACAGTCACGG CTTTGTCAGCTACACCCAAGGATGGGGGCCGGATTATCAAAAAGATTTAACCAAGGAGCCGACGGCTAAACCCGTAGAAC GCACCGTCATGAATGCCGTGCTGCACGCCATCACCACGGTGCTTAAAGGCTACCAGGAATACGGCAGCCCTGAATTCATC ACCGCCGAACAGAATAACGGCACGCCATTTTCATACATGCGTGGGGTGATCGTCCGATACCGCCCGGATCACGCAAGCCG TTACGGGCTGTATCTGTCCACGGCTGACAACAACACCGATACACCGCTACAGAATGAACCCAACCGCTGGACGGCACTCT CCAGGTACGAGCCTGGACAGATTGTCTACACCGCAGGCAAACGCGCCTTACCCGGCACCCTGTTGTGTGATGGCCGCGCT GTATCGCGTGCCATGTACCCACGCCTGTTTGAGGAAATCAACACCAGTTATGGTGCCGGTGATGGTGTCAGCACCTTCAA CATTCCCAATTTTCTTGAAGGCACCGTCGGCGTTCACACCGCCGACCCTGCCTTGGTCGGCACCTTCACCAGCGGGCAGG TGATCTCCCATGCGCACACCGCGACGGCCGAGGAGGGCGGTAGGCATCTCCATCCTGTCACAGTCCATCCCGCAGGCCGC CATACACACCCTGCCAGCGCAGCAGCGGCGGGCAATCATCTACACCAGGCATGGAGCGACGAACAAGGATTGCACCAGCA TACAGGCAGCACCTCTTGGGACGGTGACCACGCGCATATCTTGGGTTCTTTCAGAGCGATCTATGCCTCTGGAAGAGACA TGGGTTTTTATGAGCAAAATCAAGGCAAAGTCACGACCAATGTCACTGGCGGGCATCTACACAGATTCACCACCGATGCA AACGGCAAGCATGCCCATAACATCAGCATGCAGGCCGCAGGGTTTCATGTGCATGACATTGCTGTAACAGCAGAGGCAGA TCATGCTCACGCGGCAACAGCCGAATCCGCTGGCAGGCATGGCCACACCGTGTCCATTGATCGCTTTGGAGAACACCACA ACCTGCCCGCTGGCCTGCGCGTCATGGCGTGTATCGCGTATTGA
Upstream 100 bases:
>100_bases GGTTCGCTACAACCTTGTGACGCATCTGCCCTTCGGATACGAGCGCAGCAATCGTAACTACACACACGGCACCTTTGGCG ACCCACCCGAGCGATAACCC
Downstream 100 bases:
>100_bases TCAGCGACATTGATCCATCGCATTTTTTTCGATGAGGCTTTGCTCCTCCATCACCTTTAAACGTGTTCATGGCATGCACT AGAGTTCAGTGGTAATCGAC
Product: phage-related tail fiber protein
Products: NA
Alternate protein names: Phage Tail Collar Domain Family; Tail Collar Domain-Containing Protein; Phage Tail Fiber Protein; Phage Related-Protein; Ig-Like Domain-Containing Protein; Phage Tail Protein
Number of amino acids: Translated: 387; Mature: 386
Protein sequence:
>387_residues MTEHYFRTPFAHQGDMIHVPEAKDSHGFVSYTQGWGPDYQKDLTKEPTAKPVERTVMNAVLHAITTVLKGYQEYGSPEFI TAEQNNGTPFSYMRGVIVRYRPDHASRYGLYLSTADNNTDTPLQNEPNRWTALSRYEPGQIVYTAGKRALPGTLLCDGRA VSRAMYPRLFEEINTSYGAGDGVSTFNIPNFLEGTVGVHTADPALVGTFTSGQVISHAHTATAEEGGRHLHPVTVHPAGR HTHPASAAAAGNHLHQAWSDEQGLHQHTGSTSWDGDHAHILGSFRAIYASGRDMGFYEQNQGKVTTNVTGGHLHRFTTDA NGKHAHNISMQAAGFHVHDIAVTAEADHAHAATAESAGRHGHTVSIDRFGEHHNLPAGLRVMACIAY
Sequences:
>Translated_387_residues MTEHYFRTPFAHQGDMIHVPEAKDSHGFVSYTQGWGPDYQKDLTKEPTAKPVERTVMNAVLHAITTVLKGYQEYGSPEFI TAEQNNGTPFSYMRGVIVRYRPDHASRYGLYLSTADNNTDTPLQNEPNRWTALSRYEPGQIVYTAGKRALPGTLLCDGRA VSRAMYPRLFEEINTSYGAGDGVSTFNIPNFLEGTVGVHTADPALVGTFTSGQVISHAHTATAEEGGRHLHPVTVHPAGR HTHPASAAAAGNHLHQAWSDEQGLHQHTGSTSWDGDHAHILGSFRAIYASGRDMGFYEQNQGKVTTNVTGGHLHRFTTDA NGKHAHNISMQAAGFHVHDIAVTAEADHAHAATAESAGRHGHTVSIDRFGEHHNLPAGLRVMACIAY >Mature_386_residues TEHYFRTPFAHQGDMIHVPEAKDSHGFVSYTQGWGPDYQKDLTKEPTAKPVERTVMNAVLHAITTVLKGYQEYGSPEFIT AEQNNGTPFSYMRGVIVRYRPDHASRYGLYLSTADNNTDTPLQNEPNRWTALSRYEPGQIVYTAGKRALPGTLLCDGRAV SRAMYPRLFEEINTSYGAGDGVSTFNIPNFLEGTVGVHTADPALVGTFTSGQVISHAHTATAEEGGRHLHPVTVHPAGRH THPASAAAAGNHLHQAWSDEQGLHQHTGSTSWDGDHAHILGSFRAIYASGRDMGFYEQNQGKVTTNVTGGHLHRFTTDAN GKHAHNISMQAAGFHVHDIAVTAEADHAHAATAESAGRHGHTVSIDRFGEHHNLPAGLRVMACIAY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42166; Mature: 42035
Theoretical pI: Translated: 6.91; Mature: 6.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEHYFRTPFAHQGDMIHVPEAKDSHGFVSYTQGWGPDYQKDLTKEPTAKPVERTVMNAV CCCCCCCCCCCCCCCEEECCCCCCCCCEEEECCCCCCCHHHHCCCCCCCCHHHHHHHHHH LHAITTVLKGYQEYGSPEFITAEQNNGTPFSYMRGVIVRYRPDHASRYGLYLSTADNNTD HHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHCCEEEEECCCCCCEEEEEEEECCCCCC TPLQNEPNRWTALSRYEPGQIVYTAGKRALPGTLLCDGRAVSRAMYPRLFEEINTSYGAG CCCCCCCCCEEEECCCCCCCEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHCCCCCCC DGVSTFNIPNFLEGTVGVHTADPALVGTFTSGQVISHAHTATAEEGGRHLHPVTVHPAGR CCCCCCCCCCHHCCCCCEEECCCCEEEECCCCCEEHHHHHHHHHCCCCEECEEEECCCCC HTHPASAAAAGNHLHQAWSDEQGLHQHTGSTSWDGDHAHILGSFRAIYASGRDMGFYEQN CCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCHHHHHHHHHEEEECCCCCCCEECC QGKVTTNVTGGHLHRFTTDANGKHAHNISMQAAGFHVHDIAVTAEADHAHAATAESAGRH CCEEEEEECCCEEEEEECCCCCCEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHCCCC GHTVSIDRFGEHHNLPAGLRVMACIAY CCEEEHHCCCCCCCCCHHHHHHEEECC >Mature Secondary Structure TEHYFRTPFAHQGDMIHVPEAKDSHGFVSYTQGWGPDYQKDLTKEPTAKPVERTVMNAV CCCCCCCCCCCCCCEEECCCCCCCCCEEEECCCCCCCHHHHCCCCCCCCHHHHHHHHHH LHAITTVLKGYQEYGSPEFITAEQNNGTPFSYMRGVIVRYRPDHASRYGLYLSTADNNTD HHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHCCEEEEECCCCCCEEEEEEEECCCCCC TPLQNEPNRWTALSRYEPGQIVYTAGKRALPGTLLCDGRAVSRAMYPRLFEEINTSYGAG CCCCCCCCCEEEECCCCCCCEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHCCCCCCC DGVSTFNIPNFLEGTVGVHTADPALVGTFTSGQVISHAHTATAEEGGRHLHPVTVHPAGR CCCCCCCCCCHHCCCCCEEECCCCEEEECCCCCEEHHHHHHHHHCCCCEECEEEECCCCC HTHPASAAAAGNHLHQAWSDEQGLHQHTGSTSWDGDHAHILGSFRAIYASGRDMGFYEQN CCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCHHHHHHHHHEEEECCCCCCCEECC QGKVTTNVTGGHLHRFTTDANGKHAHNISMQAAGFHVHDIAVTAEADHAHAATAESAGRH CCEEEEEECCCEEEEEECCCCCCEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHCCCC GHTVSIDRFGEHHNLPAGLRVMACIAY CCEEEHHCCCCCCCCCHHHHHHEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA