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The map label for this gene is 28198718

Identifier: 28198718

GI number: 28198718

Start: 1000347

End: 1000727

Strand: Reverse

Name: 28198718

Synonym: PD0813

Alternate gene names: NA

Gene position: 1000727-1000347 (Counterclockwise)

Preceding gene: 28198722

Following gene: 28198717

Centisome position: 39.71

GC content: 54.07

Gene sequence:

>381_bases
GTGTACGTGAGCAAACTTTCCGAACGCGTTCGTGAGGCACGCAATCTATGCAGTCTGACCCAGGAGGCATTGGCCAGTGA
TCTTGGGGTTACACGCAGTGCGGTTGCCCAGTGGGAGATGGAGCAAGGGACCAAGCCATCTGTAGAGAACCTGATTGCCT
TGGCGCGCCGTACCGGTATGGCTTTTGAATATCTTTCCACAGGTCGAGGCAAACCTGATTGTGGGAAACCGATCAGCAGC
ATCTCCGAACCAACACCGACCTACCAGAAATTCGATTCACAACAAAAGCTGTTGCTGGAACAATTTGCCAAACTCACGCC
GCGTCAACGCAGCGGGCTGCTCGAATTGCTGGGAACCCCATTTGACACACTGCGCCGATGA

Upstream 100 bases:

>100_bases
CCCTGATAGATAGTTTCACTAACTTAATCACAATAGAAAGCAGTGCGAACACACCGCATCGAATGTAAGCGCTATATCTG
CGCCCTTTCATACGAGAACA

Downstream 100 bases:

>100_bases
GGCCGGAACATGATTCAATAGGATTTCGGAACCCTCCATCATCACACTTCGATGAATCAGCTCCCACCATCCCTGGTTAG
ATTTCTCCGCCCACAACCAC

Product: PbsX family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator

Number of amino acids: Translated: 126; Mature: 126

Protein sequence:

>126_residues
MYVSKLSERVREARNLCSLTQEALASDLGVTRSAVAQWEMEQGTKPSVENLIALARRTGMAFEYLSTGRGKPDCGKPISS
ISEPTPTYQKFDSQQKLLLEQFAKLTPRQRSGLLELLGTPFDTLRR

Sequences:

>Translated_126_residues
MYVSKLSERVREARNLCSLTQEALASDLGVTRSAVAQWEMEQGTKPSVENLIALARRTGMAFEYLSTGRGKPDCGKPISS
ISEPTPTYQKFDSQQKLLLEQFAKLTPRQRSGLLELLGTPFDTLRR
>Mature_126_residues
MYVSKLSERVREARNLCSLTQEALASDLGVTRSAVAQWEMEQGTKPSVENLIALARRTGMAFEYLSTGRGKPDCGKPISS
ISEPTPTYQKFDSQQKLLLEQFAKLTPRQRSGLLELLGTPFDTLRR

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14093; Mature: 14093

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYVSKLSERVREARNLCSLTQEALASDLGVTRSAVAQWEMEQGTKPSVENLIALARRTGM
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCH
AFEYLSTGRGKPDCGKPISSISEPTPTYQKFDSQQKLLLEQFAKLTPRQRSGLLELLGTP
HHHHHHCCCCCCCCCCCHHHCCCCCCHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHCCC
FDTLRR
HHHHCC
>Mature Secondary Structure
MYVSKLSERVREARNLCSLTQEALASDLGVTRSAVAQWEMEQGTKPSVENLIALARRTGM
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCH
AFEYLSTGRGKPDCGKPISSISEPTPTYQKFDSQQKLLLEQFAKLTPRQRSGLLELLGTP
HHHHHHCCCCCCCCCCCHHHCCCCCCHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHCCC
FDTLRR
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA