Click here to switch to the map view.

The map label for this gene is ybbJ [H]

Identifier: 28198081

GI number: 28198081

Start: 192765

End: 193199

Strand: Reverse

Name: ybbJ [H]

Synonym: PD0150

Alternate gene names: 28198081

Gene position: 193199-192765 (Counterclockwise)

Preceding gene: 28198082

Following gene: 28198080

Centisome position: 7.67

GC content: 50.57

Gene sequence:

>435_bases
GTGATGCGCTGGGATGCTATGGGATGGGCAGCTGCCGCACTGCTATTGCTCGCTGCCGAAACACTGATACCTGGAGCGTT
CATGCTATGGATGGGGATTGCAGCAGCAGCTGTGTTCGTCGGCGTGCTGCTGCTCCCGGATATTTCACTGCTACTGCAAA
TGTTCGCTTTTGTTGTTCTTAGCTTCGTTTCAATCTATCTCTACCGGACTTGGTTCCGCCATATCGATCATGACAGTGAC
CATCCGCTGCTAAATCGCCGTGCTGATCAGCTAGTCGGTCGTATCATCATCCTTGATCACGCTATCGTTGACGGCAACGC
TCGAATCAAAATAGACGACACATTTTGGGATATCACTGGTCCTGATTTACCCATCGGCACTCAAATCCGGATCGTTGCTT
TAGATGGCACAACACTCAAGGTACACCCCACTTAA

Upstream 100 bases:

>100_bases
TATCATCGGCTCAATCGCCGGCATTGCCGACTTGACCAGAGAAGCATTAGGTAAATCGGATCATAGTGCGACACCGTCTC
AACGACCACACCGAGGCTGA

Downstream 100 bases:

>100_bases
AGACACAAAATACGTATGAAGTCACACCATGGCATCCATTGCCATTTGGTGTGACTGGCGCCCCTAGCATGGCAACTCAG
ACCTAAATACCGCACAGCCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 144; Mature: 144

Protein sequence:

>144_residues
MMRWDAMGWAAAALLLLAAETLIPGAFMLWMGIAAAAVFVGVLLLPDISLLLQMFAFVVLSFVSIYLYRTWFRHIDHDSD
HPLLNRRADQLVGRIIILDHAIVDGNARIKIDDTFWDITGPDLPIGTQIRIVALDGTTLKVHPT

Sequences:

>Translated_144_residues
MMRWDAMGWAAAALLLLAAETLIPGAFMLWMGIAAAAVFVGVLLLPDISLLLQMFAFVVLSFVSIYLYRTWFRHIDHDSD
HPLLNRRADQLVGRIIILDHAIVDGNARIKIDDTFWDITGPDLPIGTQIRIVALDGTTLKVHPT
>Mature_144_residues
MMRWDAMGWAAAALLLLAAETLIPGAFMLWMGIAAAAVFVGVLLLPDISLLLQMFAFVVLSFVSIYLYRTWFRHIDHDSD
HPLLNRRADQLVGRIIILDHAIVDGNARIKIDDTFWDITGPDLPIGTQIRIVALDGTTLKVHPT

Specific function: Unknown

COG id: COG1585

COG function: function code OU; Membrane protein implicated in regulation of membrane protease activity

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To M.jannaschii MJ0826 [H]

Homologues:

Organism=Escherichia coli, GI145693099, Length=138, Percent_Identity=31.8840579710145, Blast_Score=70, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR002810 [H]

Pfam domain/function: PF01957 NfeD [H]

EC number: NA

Molecular weight: Translated: 16049; Mature: 16049

Theoretical pI: Translated: 5.96; Mature: 5.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMRWDAMGWAAAALLLLAAETLIPGAFMLWMGIAAAAVFVGVLLLPDISLLLQMFAFVVL
CCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
SFVSIYLYRTWFRHIDHDSDHPLLNRRADQLVGRIIILDHAIVDGNARIKIDDTFWDITG
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHEEEEEEECCCCEEEECCCEEECCC
PDLPIGTQIRIVALDGTTLKVHPT
CCCCCCCEEEEEEECCCEEEEECC
>Mature Secondary Structure
MMRWDAMGWAAAALLLLAAETLIPGAFMLWMGIAAAAVFVGVLLLPDISLLLQMFAFVVL
CCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
SFVSIYLYRTWFRHIDHDSDHPLLNRRADQLVGRIIILDHAIVDGNARIKIDDTFWDITG
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHEEEEEEECCCCEEEECCCEEECCC
PDLPIGTQIRIVALDGTTLKVHPT
CCCCCCCEEEEEEECCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]