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The map label for this gene is rplW

Identifier: 62184739

GI number: 62184739

Start: 109701

End: 110036

Strand: Direct

Name: rplW

Synonym: CAB095

Alternate gene names: 62184739

Gene position: 109701-110036 (Clockwise)

Preceding gene: 62184738

Following gene: 62184740

Centisome position: 9.59

GC content: 39.29

Gene sequence:

>336_bases
ATGAAAGATCCTTATGATGTAATCAAACGGCATTATGTAACCGAGAAGGCTAAAACACTAGAAGGTTTGAGTCTTGGGAA
TGGTGAGGGCAAAAAGAAAGGTAGTTACTGTAAGCATCCAAAGTATACATTTATCGTGGATAGCAACGCTACTAAGCCTT
TAATTGCTCAAGCTTTAGAATCTATTTATGCGGATAAAAAAGTAAAAGTTAAAAGTGTAAACACGATATGTGTGAAGCCC
CAGCCAGCCCGAATGTTTCGCGGAAAGCGAAAAGGAAAGACTGCTGGATTTAAGAAGGCAGTTGTGACTTTCTATGAAGG
CCATTCTATCGGGTAA

Upstream 100 bases:

>100_bases
CTAGTCTCTGCCCGCAATATAGTGATTTCCGAAAAGGCTCTTAATAGACTCTCCGGGCATCTTATTTCTGCAATGAAAGA
TTAAAAGGGAATTTTAGGAC

Downstream 100 bases:

>100_bases
TCTATTAGAGGGAAGAAAAACATGTTTAAAAAGTTTAAGCCAGTAACTCCAGGAACTAGACAGTTGGTTCTTCCGGCTTT
TGATGAGCTGACCACACAGG

Product: 50S ribosomal protein L23

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 111; Mature: 111

Protein sequence:

>111_residues
MKDPYDVIKRHYVTEKAKTLEGLSLGNGEGKKKGSYCKHPKYTFIVDSNATKPLIAQALESIYADKKVKVKSVNTICVKP
QPARMFRGKRKGKTAGFKKAVVTFYEGHSIG

Sequences:

>Translated_111_residues
MKDPYDVIKRHYVTEKAKTLEGLSLGNGEGKKKGSYCKHPKYTFIVDSNATKPLIAQALESIYADKKVKVKSVNTICVKP
QPARMFRGKRKGKTAGFKKAVVTFYEGHSIG
>Mature_111_residues
MKDPYDVIKRHYVTEKAKTLEGLSLGNGEGKKKGSYCKHPKYTFIVDSNATKPLIAQALESIYADKKVKVKSVNTICVKP
QPARMFRGKRKGKTAGFKKAVVTFYEGHSIG

Specific function: One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome

COG id: COG0089

COG function: function code J; Ribosomal protein L23

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L23P family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL23_CHLAB (Q5L718)

Other databases:

- EMBL:   CR848038
- RefSeq:   YP_219524.1
- HSSP:   Q9RA57
- ProteinModelPortal:   Q5L718
- SMR:   Q5L718
- GeneID:   3337495
- GenomeReviews:   CR848038_GR
- KEGG:   cab:CAB095
- HOGENOM:   HBG439330
- OMA:   KSVNTIC
- ProtClustDB:   PRK05738
- BioCyc:   CABO218497:CAB095-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_01369_B
- InterPro:   IPR012677
- InterPro:   IPR012678
- InterPro:   IPR013025
- Gene3D:   G3DSA:3.30.70.330

Pfam domain/function: PF00276 Ribosomal_L23; SSF54189 L23_L15e_core

EC number: NA

Molecular weight: Translated: 12351; Mature: 12351

Theoretical pI: Translated: 10.58; Mature: 10.58

Prosite motif: PS00050 RIBOSOMAL_L23

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDPYDVIKRHYVTEKAKTLEGLSLGNGEGKKKGSYCKHPKYTFIVDSNATKPLIAQALE
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHH
SIYADKKVKVKSVNTICVKPQPARMFRGKRKGKTAGFKKAVVTFYEGHSIG
HHHCCCCEEEECCCEEEECCCCHHHHCCCCCCCCCCHHHHEEEEECCCCCC
>Mature Secondary Structure
MKDPYDVIKRHYVTEKAKTLEGLSLGNGEGKKKGSYCKHPKYTFIVDSNATKPLIAQALE
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHH
SIYADKKVKVKSVNTICVKPQPARMFRGKRKGKTAGFKKAVVTFYEGHSIG
HHHCCCCEEEECCCEEEECCCCHHHHCCCCCCCCCCHHHHEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA