| Definition | Chlamydophila abortus S26/3, complete genome. |
|---|---|
| Accession | NC_004552 |
| Length | 1,144,377 |
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The map label for this gene is xcpQ [H]
Identifier: 62184688
GI number: 62184688
Start: 49402
End: 52128
Strand: Direct
Name: xcpQ [H]
Synonym: CAB041
Alternate gene names: 62184688
Gene position: 49402-52128 (Clockwise)
Preceding gene: 62184687
Following gene: 62184696
Centisome position: 4.32
GC content: 40.89
Gene sequence:
>2727_bases GTGAAAATAGTGACGTCGAACATTGGAAGAAAGATCTTACAGGTCATAAATAAGAAAAAAGGAAAAATCGGAGTACTTTC TATTCTGTTGTTCTTTGACCTGGTTTTGCTTGGTGTGAATTCTCAAAAACCTGCAACTGACGAGCCGAGATCTCGAGTTA AAAACTCCCAAACTGACGAGAAAAGCCAAATTGCTGCCTGTCCTAAAAACATAGTCAATAAAACATCAGCAAAAAAATCT GATAAGCAGGCCGTAGTTAAAAACTTCCCGTCGAACCAGCCACGGCATTTTAAAAAATCTACGCAGACGTTTTCTCCAGG ATTTTCTGAAGGTTCACCATTTGCTAAGCCTGAAGCGAAAAAACGCCTTCAGGATAATCGCTACACGCAAACTACTGCAA AAAAGACCCCTAGGTTCCTCTCTAAACAAGAAGAAAAAACTGAAGTTACTGAAGGGAAAAGTGAAGAAGAGCGTATTTGG GAAGATAAACGTGCTTACGCTAAACGCGCTGTAAATGCCATAAACTTCAGTGTTAAAAAACTGGTGGAAGAAAGCGACAA AAAAAGTTCCCAGGAAGAAGGCTTTAAAGTTGATCATCATTCTGGATCCCCGAACGCATTAACGAAATCACCAGATAAAC AACCCTCGATTGATAAAATAGCCATACAGCCCGAGGCAACAAAAGAGGAAGAAGAAGCGCCCGCGCTATTGAAAGGGAAA CAAATTACTTGTGAAGACCTGAAAGACAACGGTTATACTGTAAATTTCGAAGACATCTCTGTTCTTGAGCTATTACAGTT CGTGAGTAAGATTTCAGGAACCAACTTTGTTTTCGATAGTAATGATTTAAATTTCAATGTAACGATTGTTTCTCACGATC CTACATCTGTAGACGATCTCTCTACGATTCTTTTACAAGTCTTAAAAATGCATGACTTGAAAGTTGTAGAACAAGGAAAT AACGTCCTTATTTATCGTAATCCACGTCTTTCTAAGTTGTCTACGGTAGTCACTGATGGTTCTGCAAAAGATAATTGCGA AGCTGTTGTAGTGACTCGTGTATTCCGTTTATACAGTGTACATCCTACATCAGCTGTAAATATTATCCAGCCTTTGCTCT CCCATGATGCTATAGTCAGCGCTTCAGAAGCCACACGTCATGTCATCGTGTCGGACATTGCTGGCAATGTAGAGAAAGTA GGAGAGTTGCTAGCAGCTCTAGATAGTCCCGGTACATCCGTAGATATGTCTGAGTATGAAGTCCGCTATGCAAATCCGGC GTCATTAGTGAGCTATTGCCAAGATGTTCTTGGCGCCATGGCAGAGGATGAAGCTTTTCAAATTTTCATACAGCCAGGAA CAAATAAGATTTTTGTAGTTTCCTCCCCGCGTTTAACAAACAAGGCAATACAACTGCTCAAATCCTTAGATGTTCCAGAA ATGGCACATACATTAGATGACGTAACTAGTCCTGCATCCGCTCTCGGAACATCAGGAGCTGCGAATCCTAAAAGCTTGCG CTTTTTCATGTATAAGCTGAAGTATCAAAATGGCGCAGCTATTGCTCAAGCAATTCAAGACATCGGTTATAATCTCTACG TCACCACAGCTATGGATGAAGATTTCATCAACACATTGAATAGTATTCAATGGTTAGATGTGAACAATTCTATCGTTGTT ATCGGAAATCAAACCAACGTAGATAAAGTAGTCAGCTTACTCAATGGCTTGGATCTACCTCCCAAGCAAGTATACATTGA AGTTTTGATCTTAGAGACAAGTTTAGAAAAGTCTTGGGATTTCGGGGTTCAATGGGTGGCTCTCGGTGATGAACAAGGGA AAGTCGCTTATGCTTCAGGATTGTTGAGCAATACCGGTCTTGCGAATCCTGCAAAATCTACAGTACCTCCTGCAAAACCT TCTCCAGGAGATATCCCTTTACCTACGCCGGGTCAGCTAGCCGGTATTAGCGATATGATGTATGCATCTTCAGCATTTGG TTTGGGGATCATCGGAAACGTTCTAAGCCATAAGGGCAAATCTTTTCTAACCCTAGGGGGGCTGCTCAGTGCCTTAGATC AAGATGGCGACACTGTGATAGTTCTTAACCCAAGAATTATGGCCCAGGATACGCAACAAGCATCTTTCTTCGTTGGACAG ACTATACCGTTCCAAACGACCAGTACCATTATTCAAGAAACAGGAACAGTTACACAAAATATCGAATATGAAGATATCGG TGTGAATCTTGTTGTTGCTTCAACCATAGCACCAAATAACGTTGTTACCTTACAAATAGAACAAACGATTTCCGAGCTAC ACTCTGCTCAAGGAACACTTACACCGGTAACAGATAAAACATACGCCGCTACACGTTTGCAAGTTCCTGATGGTTGTTTC TTAGTCATGAGTGGCCATATCAGAGATAAAACTACGAAAATTGTTACTGGAGTTCCTCTTTTAAACTCCATACCTTTGCT TCGAGGTTTATTCAGCAGAACAATAGATCAAAGGCAAAAACGCAACATCATGATGTTCATTAAGCCTAAGGTGATTAGTA GTTTTGAAGAAGGAACAAAATTAACCAATAAAGAAGGCTATAGATACAATTGGGAAGCTAATGAAGGCTCGATGCAGGTA GCACCGCGACATGCTCCTGAATGTCAACACCCCCCAGCACTGCAAGTAGAAAGTGATTTTAAAATGCTAGAAATAGAAGC CCAATAA
Upstream 100 bases:
>100_bases CAGCTATATTCTGCCCAATAGAGAGCGTACAGTTCGGGATATTAGAAAATCATGACGGAAATCTTTGTCCCTCAACACTT ATCAGCTTAAAAAGAATCTG
Downstream 100 bases:
>100_bases ATGTTATATAGAAAAAGTAAGATGATATTCTGCGCCATGGAATAGCTTCTCACTCTGTTGTATTTCAGGGGGAAAGCCAA GAAAGCATCGTCGGCCGTAT
Product: putative general secretion protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 908; Mature: 908
Protein sequence:
>908_residues MKIVTSNIGRKILQVINKKKGKIGVLSILLFFDLVLLGVNSQKPATDEPRSRVKNSQTDEKSQIAACPKNIVNKTSAKKS DKQAVVKNFPSNQPRHFKKSTQTFSPGFSEGSPFAKPEAKKRLQDNRYTQTTAKKTPRFLSKQEEKTEVTEGKSEEERIW EDKRAYAKRAVNAINFSVKKLVEESDKKSSQEEGFKVDHHSGSPNALTKSPDKQPSIDKIAIQPEATKEEEEAPALLKGK QITCEDLKDNGYTVNFEDISVLELLQFVSKISGTNFVFDSNDLNFNVTIVSHDPTSVDDLSTILLQVLKMHDLKVVEQGN NVLIYRNPRLSKLSTVVTDGSAKDNCEAVVVTRVFRLYSVHPTSAVNIIQPLLSHDAIVSASEATRHVIVSDIAGNVEKV GELLAALDSPGTSVDMSEYEVRYANPASLVSYCQDVLGAMAEDEAFQIFIQPGTNKIFVVSSPRLTNKAIQLLKSLDVPE MAHTLDDVTSPASALGTSGAANPKSLRFFMYKLKYQNGAAIAQAIQDIGYNLYVTTAMDEDFINTLNSIQWLDVNNSIVV IGNQTNVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWVALGDEQGKVAYASGLLSNTGLANPAKSTVPPAKP SPGDIPLPTPGQLAGISDMMYASSAFGLGIIGNVLSHKGKSFLTLGGLLSALDQDGDTVIVLNPRIMAQDTQQASFFVGQ TIPFQTTSTIIQETGTVTQNIEYEDIGVNLVVASTIAPNNVVTLQIEQTISELHSAQGTLTPVTDKTYAATRLQVPDGCF LVMSGHIRDKTTKIVTGVPLLNSIPLLRGLFSRTIDQRQKRNIMMFIKPKVISSFEEGTKLTNKEGYRYNWEANEGSMQV APRHAPECQHPPALQVESDFKMLEIEAQ
Sequences:
>Translated_908_residues MKIVTSNIGRKILQVINKKKGKIGVLSILLFFDLVLLGVNSQKPATDEPRSRVKNSQTDEKSQIAACPKNIVNKTSAKKS DKQAVVKNFPSNQPRHFKKSTQTFSPGFSEGSPFAKPEAKKRLQDNRYTQTTAKKTPRFLSKQEEKTEVTEGKSEEERIW EDKRAYAKRAVNAINFSVKKLVEESDKKSSQEEGFKVDHHSGSPNALTKSPDKQPSIDKIAIQPEATKEEEEAPALLKGK QITCEDLKDNGYTVNFEDISVLELLQFVSKISGTNFVFDSNDLNFNVTIVSHDPTSVDDLSTILLQVLKMHDLKVVEQGN NVLIYRNPRLSKLSTVVTDGSAKDNCEAVVVTRVFRLYSVHPTSAVNIIQPLLSHDAIVSASEATRHVIVSDIAGNVEKV GELLAALDSPGTSVDMSEYEVRYANPASLVSYCQDVLGAMAEDEAFQIFIQPGTNKIFVVSSPRLTNKAIQLLKSLDVPE MAHTLDDVTSPASALGTSGAANPKSLRFFMYKLKYQNGAAIAQAIQDIGYNLYVTTAMDEDFINTLNSIQWLDVNNSIVV IGNQTNVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWVALGDEQGKVAYASGLLSNTGLANPAKSTVPPAKP SPGDIPLPTPGQLAGISDMMYASSAFGLGIIGNVLSHKGKSFLTLGGLLSALDQDGDTVIVLNPRIMAQDTQQASFFVGQ TIPFQTTSTIIQETGTVTQNIEYEDIGVNLVVASTIAPNNVVTLQIEQTISELHSAQGTLTPVTDKTYAATRLQVPDGCF LVMSGHIRDKTTKIVTGVPLLNSIPLLRGLFSRTIDQRQKRNIMMFIKPKVISSFEEGTKLTNKEGYRYNWEANEGSMQV APRHAPECQHPPALQVESDFKMLEIEAQ >Mature_908_residues MKIVTSNIGRKILQVINKKKGKIGVLSILLFFDLVLLGVNSQKPATDEPRSRVKNSQTDEKSQIAACPKNIVNKTSAKKS DKQAVVKNFPSNQPRHFKKSTQTFSPGFSEGSPFAKPEAKKRLQDNRYTQTTAKKTPRFLSKQEEKTEVTEGKSEEERIW EDKRAYAKRAVNAINFSVKKLVEESDKKSSQEEGFKVDHHSGSPNALTKSPDKQPSIDKIAIQPEATKEEEEAPALLKGK QITCEDLKDNGYTVNFEDISVLELLQFVSKISGTNFVFDSNDLNFNVTIVSHDPTSVDDLSTILLQVLKMHDLKVVEQGN NVLIYRNPRLSKLSTVVTDGSAKDNCEAVVVTRVFRLYSVHPTSAVNIIQPLLSHDAIVSASEATRHVIVSDIAGNVEKV GELLAALDSPGTSVDMSEYEVRYANPASLVSYCQDVLGAMAEDEAFQIFIQPGTNKIFVVSSPRLTNKAIQLLKSLDVPE MAHTLDDVTSPASALGTSGAANPKSLRFFMYKLKYQNGAAIAQAIQDIGYNLYVTTAMDEDFINTLNSIQWLDVNNSIVV IGNQTNVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWVALGDEQGKVAYASGLLSNTGLANPAKSTVPPAKP SPGDIPLPTPGQLAGISDMMYASSAFGLGIIGNVLSHKGKSFLTLGGLLSALDQDGDTVIVLNPRIMAQDTQQASFFVGQ TIPFQTTSTIIQETGTVTQNIEYEDIGVNLVVASTIAPNNVVTLQIEQTISELHSAQGTLTPVTDKTYAATRLQVPDGCF LVMSGHIRDKTTKIVTGVPLLNSIPLLRGLFSRTIDQRQKRNIMMFIKPKVISSFEEGTKLTNKEGYRYNWEANEGSMQV APRHAPECQHPPALQVESDFKMLEIEAQ
Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]
COG id: COG1450
COG function: function code NU; Type II secretory pathway, component PulD
Gene ontology:
Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GSP D family [H]
Homologues:
Organism=Escherichia coli, GI87082242, Length=667, Percent_Identity=23.5382308845577, Blast_Score=115, Evalue=1e-26, Organism=Escherichia coli, GI1789793, Length=305, Percent_Identity=25.2459016393443, Blast_Score=67, Evalue=4e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001775 - InterPro: IPR005644 - InterPro: IPR004846 - InterPro: IPR013356 - InterPro: IPR004845 [H]
Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N [H]
EC number: NA
Molecular weight: Translated: 99475; Mature: 99475
Theoretical pI: Translated: 6.42; Mature: 6.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIVTSNIGRKILQVINKKKGKIGVLSILLFFDLVLLGVNSQKPATDEPRSRVKNSQTDE CEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCH KSQIAACPKNIVNKTSAKKSDKQAVVKNFPSNQPRHFKKSTQTFSPGFSEGSPFAKPEAK HHHHHHCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCHHH KRLQDNRYTQTTAKKTPRFLSKQEEKTEVTEGKSEEERIWEDKRAYAKRAVNAINFSVKK HHHHCCCCCHHHHHHCHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH LVEESDKKSSQEEGFKVDHHSGSPNALTKSPDKQPSIDKIAIQPEATKEEEEAPALLKGK HHHHHHHCCCHHCCCEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHCCHHHCCC QITCEDLKDNGYTVNFEDISVLELLQFVSKISGTNFVFDSNDLNFNVTIVSHDPTSVDDL CCCHHHHCCCCCEEEECCCHHHHHHHHHHHCCCCEEEEECCCCEEEEEEEECCCCCHHHH STILLQVLKMHDLKVVEQGNNVLIYRNPRLSKLSTVVTDGSAKDNCEAVVVTRVFRLYSV HHHHHHHHHHHCCEEEECCCCEEEEECCCCCHHHHEEECCCCCCCCCCHHHHHHHHHHCC HPTSAVNIIQPLLSHDAIVSASEATRHVIVSDIAGNVEKVGELLAALDSPGTSVDMSEYE CCCHHHHHHHHHHHCCCEEECCHHHHEEEEHHHCCCHHHHHHHHHHHCCCCCCCCCCCCE VRYANPASLVSYCQDVLGAMAEDEAFQIFIQPGTNKIFVVSSPRLTNKAIQLLKSLDVPE EEECCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEECCCHHHHHHHHHHHCCCHH MAHTLDDVTSPASALGTSGAANPKSLRFFMYKLKYQNGAAIAQAIQDIGYNLYVTTAMDE HHHHHHHHCCCHHHHCCCCCCCHHHHEEEEEEEEECCCHHHHHHHHHCCCEEEEEEECCH DFINTLNSIQWLDVNNSIVVIGNQTNVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWD HHHHHHCCEEEEECCCCEEEEECCCCHHHHHHHHHCCCCCHHHEEEEEEEEECCCCCCCC FGVQWVALGDEQGKVAYASGLLSNTGLANPAKSTVPPAKPSPGDIPLPTPGQLAGISDMM CCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH YASSAFGLGIIGNVLSHKGKSFLTLGGLLSALDQDGDTVIVLNPRIMAQDTQQASFFVGQ HHHCCCCHHHHHHHHHCCCCCEEHHHHHHHHHCCCCCEEEEECCEEEECCCCCCEEEECC TIPFQTTSTIIQETGTVTQNIEYEDIGVNLVVASTIAPNNVVTLQIEQTISELHSAQGTL CCCCCHHHHHHHHCCCCCCCCEEECCCEEEEEEEEECCCCEEEEEEHHHHHHHHHCCCCE TPVTDKTYAATRLQVPDGCFLVMSGHIRDKTTKIVTGVPLLNSIPLLRGLFSRTIDQRQK ECCCCCCEEEEEEECCCCEEEEEECCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHH RNIMMFIKPKVISSFEEGTKLTNKEGYRYNWEANEGSMQVAPRHAPECQHPPALQVESDF CCEEEEECHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEECCCCCCCCCCCCCEEECCCC KMLEIEAQ EEEEEECC >Mature Secondary Structure MKIVTSNIGRKILQVINKKKGKIGVLSILLFFDLVLLGVNSQKPATDEPRSRVKNSQTDE CEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCH KSQIAACPKNIVNKTSAKKSDKQAVVKNFPSNQPRHFKKSTQTFSPGFSEGSPFAKPEAK HHHHHHCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCHHH KRLQDNRYTQTTAKKTPRFLSKQEEKTEVTEGKSEEERIWEDKRAYAKRAVNAINFSVKK HHHHCCCCCHHHHHHCHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH LVEESDKKSSQEEGFKVDHHSGSPNALTKSPDKQPSIDKIAIQPEATKEEEEAPALLKGK HHHHHHHCCCHHCCCEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHCCHHHCCC QITCEDLKDNGYTVNFEDISVLELLQFVSKISGTNFVFDSNDLNFNVTIVSHDPTSVDDL CCCHHHHCCCCCEEEECCCHHHHHHHHHHHCCCCEEEEECCCCEEEEEEEECCCCCHHHH STILLQVLKMHDLKVVEQGNNVLIYRNPRLSKLSTVVTDGSAKDNCEAVVVTRVFRLYSV HHHHHHHHHHHCCEEEECCCCEEEEECCCCCHHHHEEECCCCCCCCCCHHHHHHHHHHCC HPTSAVNIIQPLLSHDAIVSASEATRHVIVSDIAGNVEKVGELLAALDSPGTSVDMSEYE CCCHHHHHHHHHHHCCCEEECCHHHHEEEEHHHCCCHHHHHHHHHHHCCCCCCCCCCCCE VRYANPASLVSYCQDVLGAMAEDEAFQIFIQPGTNKIFVVSSPRLTNKAIQLLKSLDVPE EEECCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEECCCHHHHHHHHHHHCCCHH MAHTLDDVTSPASALGTSGAANPKSLRFFMYKLKYQNGAAIAQAIQDIGYNLYVTTAMDE HHHHHHHHCCCHHHHCCCCCCCHHHHEEEEEEEEECCCHHHHHHHHHCCCEEEEEEECCH DFINTLNSIQWLDVNNSIVVIGNQTNVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWD HHHHHHCCEEEEECCCCEEEEECCCCHHHHHHHHHCCCCCHHHEEEEEEEEECCCCCCCC FGVQWVALGDEQGKVAYASGLLSNTGLANPAKSTVPPAKPSPGDIPLPTPGQLAGISDMM CCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH YASSAFGLGIIGNVLSHKGKSFLTLGGLLSALDQDGDTVIVLNPRIMAQDTQQASFFVGQ HHHCCCCHHHHHHHHHCCCCCEEHHHHHHHHHCCCCCEEEEECCEEEECCCCCCEEEECC TIPFQTTSTIIQETGTVTQNIEYEDIGVNLVVASTIAPNNVVTLQIEQTISELHSAQGTL CCCCCHHHHHHHHCCCCCCCCEEECCCEEEEEEEEECCCCEEEEEEHHHHHHHHHCCCCE TPVTDKTYAATRLQVPDGCFLVMSGHIRDKTTKIVTGVPLLNSIPLLRGLFSRTIDQRQK ECCCCCCEEEEEEECCCCEEEEEECCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHH RNIMMFIKPKVISSFEEGTKLTNKEGYRYNWEANEGSMQVAPRHAPECQHPPALQVESDF CCEEEEECHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEECCCCCCCCCCCCCEEECCCC KMLEIEAQ EEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7934833; 10984043 [H]