| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
Click here to switch to the map view.
The map label for this gene is 28572914
Identifier: 28572914
GI number: 28572914
Start: 871415
End: 871729
Strand: Reverse
Name: 28572914
Synonym: TW773
Alternate gene names: NA
Gene position: 871729-871415 (Counterclockwise)
Preceding gene: 28572915
Following gene: 28572913
Centisome position: 94.15
GC content: 43.49
Gene sequence:
>315_bases ATGCATGTTATGACTGGAAAAGCTATGCCTATCCAGCAGCAAGTCGGTGTGGTTCTTGTTGTTGCTATGTTGGTCATACC GGGCGTCTCGGCAAGTCTGCTTAGCAGAAAAATATCAAGAATGTTTATCATATCTCCCGTCATGGCTGTTACAACTTCTG TAGCTGGTGTTTACATAAGCTACACATTTGACTTACCACCGGGATCGGTGATTGTCTTGGTTATGGGATCAGTGTTCGTT CTCACATACACTGTAACGAGTATCATGTCAATGATTGTGAGCAATAGAACTCTGTTGAGGACAAGACACGGGTAA
Upstream 100 bases:
>100_bases CCGTCCTACCCAGCACCGTCCTACCGCAGTAACAACACTGGTTAATGCCTACAGTGCTTTTTACTCCCAGTGCTTTTTAC TCTGCAGTATGAAGTTTTAG
Downstream 100 bases:
>100_bases CACTGGTGTTCTAGTATTTATGGATTGCGTCATGCAATGAGGTTTGCTATGCTTATCACCGGTTATTTAAGAGGGAATGG GGTGATTAGTTAAATTGATG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 104; Mature: 104
Protein sequence:
>104_residues MHVMTGKAMPIQQQVGVVLVVAMLVIPGVSASLLSRKISRMFIISPVMAVTTSVAGVYISYTFDLPPGSVIVLVMGSVFV LTYTVTSIMSMIVSNRTLLRTRHG
Sequences:
>Translated_104_residues MHVMTGKAMPIQQQVGVVLVVAMLVIPGVSASLLSRKISRMFIISPVMAVTTSVAGVYISYTFDLPPGSVIVLVMGSVFV LTYTVTSIMSMIVSNRTLLRTRHG >Mature_104_residues MHVMTGKAMPIQQQVGVVLVVAMLVIPGVSASLLSRKISRMFIISPVMAVTTSVAGVYISYTFDLPPGSVIVLVMGSVFV LTYTVTSIMSMIVSNRTLLRTRHG
Specific function: Unknown
COG id: COG1108
COG function: function code P; ABC-type Mn2+/Zn2+ transport systems, permease components
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 11171; Mature: 11171
Theoretical pI: Translated: 11.50; Mature: 11.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 8.7 %Met (Translated Protein) 8.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 8.7 %Met (Mature Protein) 8.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHVMTGKAMPIQQQVGVVLVVAMLVIPGVSASLLSRKISRMFIISPVMAVTTSVAGVYIS CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCEEEEE YTFDLPPGSVIVLVMGSVFVLTYTVTSIMSMIVSNRTLLRTRHG EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEECCC >Mature Secondary Structure MHVMTGKAMPIQQQVGVVLVVAMLVIPGVSASLLSRKISRMFIISPVMAVTTSVAGVYIS CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCEEEEE YTFDLPPGSVIVLVMGSVFVLTYTVTSIMSMIVSNRTLLRTRHG EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA