Definition Tropheryma whipplei TW08/27, complete genome.
Accession NC_004551
Length 925,938

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The map label for this gene is 28572914

Identifier: 28572914

GI number: 28572914

Start: 871415

End: 871729

Strand: Reverse

Name: 28572914

Synonym: TW773

Alternate gene names: NA

Gene position: 871729-871415 (Counterclockwise)

Preceding gene: 28572915

Following gene: 28572913

Centisome position: 94.15

GC content: 43.49

Gene sequence:

>315_bases
ATGCATGTTATGACTGGAAAAGCTATGCCTATCCAGCAGCAAGTCGGTGTGGTTCTTGTTGTTGCTATGTTGGTCATACC
GGGCGTCTCGGCAAGTCTGCTTAGCAGAAAAATATCAAGAATGTTTATCATATCTCCCGTCATGGCTGTTACAACTTCTG
TAGCTGGTGTTTACATAAGCTACACATTTGACTTACCACCGGGATCGGTGATTGTCTTGGTTATGGGATCAGTGTTCGTT
CTCACATACACTGTAACGAGTATCATGTCAATGATTGTGAGCAATAGAACTCTGTTGAGGACAAGACACGGGTAA

Upstream 100 bases:

>100_bases
CCGTCCTACCCAGCACCGTCCTACCGCAGTAACAACACTGGTTAATGCCTACAGTGCTTTTTACTCCCAGTGCTTTTTAC
TCTGCAGTATGAAGTTTTAG

Downstream 100 bases:

>100_bases
CACTGGTGTTCTAGTATTTATGGATTGCGTCATGCAATGAGGTTTGCTATGCTTATCACCGGTTATTTAAGAGGGAATGG
GGTGATTAGTTAAATTGATG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 104; Mature: 104

Protein sequence:

>104_residues
MHVMTGKAMPIQQQVGVVLVVAMLVIPGVSASLLSRKISRMFIISPVMAVTTSVAGVYISYTFDLPPGSVIVLVMGSVFV
LTYTVTSIMSMIVSNRTLLRTRHG

Sequences:

>Translated_104_residues
MHVMTGKAMPIQQQVGVVLVVAMLVIPGVSASLLSRKISRMFIISPVMAVTTSVAGVYISYTFDLPPGSVIVLVMGSVFV
LTYTVTSIMSMIVSNRTLLRTRHG
>Mature_104_residues
MHVMTGKAMPIQQQVGVVLVVAMLVIPGVSASLLSRKISRMFIISPVMAVTTSVAGVYISYTFDLPPGSVIVLVMGSVFV
LTYTVTSIMSMIVSNRTLLRTRHG

Specific function: Unknown

COG id: COG1108

COG function: function code P; ABC-type Mn2+/Zn2+ transport systems, permease components

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 11171; Mature: 11171

Theoretical pI: Translated: 11.50; Mature: 11.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
8.7 %Met     (Translated Protein)
8.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
8.7 %Met     (Mature Protein)
8.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHVMTGKAMPIQQQVGVVLVVAMLVIPGVSASLLSRKISRMFIISPVMAVTTSVAGVYIS
CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCEEEEE
YTFDLPPGSVIVLVMGSVFVLTYTVTSIMSMIVSNRTLLRTRHG
EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEECCC
>Mature Secondary Structure
MHVMTGKAMPIQQQVGVVLVVAMLVIPGVSASLLSRKISRMFIISPVMAVTTSVAGVYIS
CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCEEEEE
YTFDLPPGSVIVLVMGSVFVLTYTVTSIMSMIVSNRTLLRTRHG
EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA