| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
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The map label for this gene is 28572815
Identifier: 28572815
GI number: 28572815
Start: 765382
End: 766143
Strand: Reverse
Name: 28572815
Synonym: TW674
Alternate gene names: NA
Gene position: 766143-765382 (Counterclockwise)
Preceding gene: 28572816
Following gene: 28572814
Centisome position: 82.74
GC content: 43.04
Gene sequence:
>762_bases ATGCCTAAGACAACAACATCTGTAACACAACCCAGACAATCATCCTTCTTTCCCCTCCTAACAGGTTTCTTCACCTATCT CTTTCTCCTTACAAGACCACATAAGAGAAGACTGTTCATGGCAGGATTAGTTAGGAAATACAATAATCCGCCATGGGGTG TTCATTTCGTCTCGTATGTGCTTACCGCCATACCTGTGATTTTATTTATCATGTCTCTTACATACCTCTTCTCGTTACTT GGTGTGGATCGGGGCTATTACATGACAAGCGCTTCAAGCGGCGGCTCGTTATTTTTCTTAATTTTCGTGCTCTTTTTCTA TCAGTTAGTAGTCTTTCCATACCTGGATCGCACAAAACGATCCTTCTTCCTCCGCTACTCCTATTACTCACAAACCCCAT CTTTCCAAAACCCAACCAAACGCAGACAAATCCTCCTGCTTGACGTGCAACAAAAAGGCACTCGCTGGACCTCTGATGAT GTTTTGAATTTTATTGCCTCGCTTGCTGTGTTTCTATTTATCTGGCTATTGCTCTTGCCGGACTCTCCTGGACTGCCGCT CTTTTATACCCAGAGCCTGCTCCTCTTAGCCTCTATCGCCGCTGTCTACTACCTTTGGCTATTTGGTTACAATTCTCCCC CTATCCGCAAACTCCTCTATAACCTACATATAAGAAGACATGGACCAATACCAAAGGAACTAACAGATATAGTTACCCAA GCCTATGAGATATATCCAGAACAGATAAAGGGTAATAAATAA
Upstream 100 bases:
>100_bases ACATGCTGTCTTGGCCCTGCCCTCCCTTCCAACCCCGCTACATCCGCTTTGATCCCTTCAGAACCAAGTGTGGCTAATCT GTAACAGATAAGGAGATAAA
Downstream 100 bases:
>100_bases AACAAGGACATATGCCGCTCTAGGGTATTGGCCGCCGCCGTGATTGTTGTTTTGCACTCTGTTTGCGCCTCGTAGACGCT GACAGTTTATGGACGGATCT
Product: integral membrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 253; Mature: 252
Protein sequence:
>253_residues MPKTTTSVTQPRQSSFFPLLTGFFTYLFLLTRPHKRRLFMAGLVRKYNNPPWGVHFVSYVLTAIPVILFIMSLTYLFSLL GVDRGYYMTSASSGGSLFFLIFVLFFYQLVVFPYLDRTKRSFFLRYSYYSQTPSFQNPTKRRQILLLDVQQKGTRWTSDD VLNFIASLAVFLFIWLLLLPDSPGLPLFYTQSLLLLASIAAVYYLWLFGYNSPPIRKLLYNLHIRRHGPIPKELTDIVTQ AYEIYPEQIKGNK
Sequences:
>Translated_253_residues MPKTTTSVTQPRQSSFFPLLTGFFTYLFLLTRPHKRRLFMAGLVRKYNNPPWGVHFVSYVLTAIPVILFIMSLTYLFSLL GVDRGYYMTSASSGGSLFFLIFVLFFYQLVVFPYLDRTKRSFFLRYSYYSQTPSFQNPTKRRQILLLDVQQKGTRWTSDD VLNFIASLAVFLFIWLLLLPDSPGLPLFYTQSLLLLASIAAVYYLWLFGYNSPPIRKLLYNLHIRRHGPIPKELTDIVTQ AYEIYPEQIKGNK >Mature_252_residues PKTTTSVTQPRQSSFFPLLTGFFTYLFLLTRPHKRRLFMAGLVRKYNNPPWGVHFVSYVLTAIPVILFIMSLTYLFSLLG VDRGYYMTSASSGGSLFFLIFVLFFYQLVVFPYLDRTKRSFFLRYSYYSQTPSFQNPTKRRQILLLDVQQKGTRWTSDDV LNFIASLAVFLFIWLLLLPDSPGLPLFYTQSLLLLASIAAVYYLWLFGYNSPPIRKLLYNLHIRRHGPIPKELTDIVTQA YEIYPEQIKGNK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29529; Mature: 29398
Theoretical pI: Translated: 10.33; Mature: 10.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKTTTSVTQPRQSSFFPLLTGFFTYLFLLTRPHKRRLFMAGLVRKYNNPPWGVHFVSYV CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHH LTAIPVILFIMSLTYLFSLLGVDRGYYMTSASSGGSLFFLIFVLFFYQLVVFPYLDRTKR HHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH SFFLRYSYYSQTPSFQNPTKRRQILLLDVQQKGTRWTSDDVLNFIASLAVFLFIWLLLLP HHEEEEHHHCCCCCCCCCHHHCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC DSPGLPLFYTQSLLLLASIAAVYYLWLFGYNSPPIRKLLYNLHIRRHGPIPKELTDIVTQ CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHH AYEIYPEQIKGNK HHHHHHHHHCCCC >Mature Secondary Structure PKTTTSVTQPRQSSFFPLLTGFFTYLFLLTRPHKRRLFMAGLVRKYNNPPWGVHFVSYV CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHH LTAIPVILFIMSLTYLFSLLGVDRGYYMTSASSGGSLFFLIFVLFFYQLVVFPYLDRTKR HHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH SFFLRYSYYSQTPSFQNPTKRRQILLLDVQQKGTRWTSDDVLNFIASLAVFLFIWLLLLP HHEEEEHHHCCCCCCCCCHHHCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC DSPGLPLFYTQSLLLLASIAAVYYLWLFGYNSPPIRKLLYNLHIRRHGPIPKELTDIVTQ CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHH AYEIYPEQIKGNK HHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA