| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
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The map label for this gene is php [C]
Identifier: 28572813
GI number: 28572813
Start: 763248
End: 764228
Strand: Reverse
Name: php [C]
Synonym: TW672
Alternate gene names: 28572813
Gene position: 764228-763248 (Counterclockwise)
Preceding gene: 28572814
Following gene: 28572812
Centisome position: 82.54
GC content: 46.28
Gene sequence:
>981_bases TTGGGATTTGTAAGGACGATAAAGGGTGACGTTTCGCCCGATTTACTTGGGTGTGTTAATTGCCACGATCATTTGATTCG TACCGGCGCCGGTGAGGTGTATTTAGACAAGGATCATTTGCTGGACAGTGTCGACAAGGCAGTTGAAGAGGCGAGTTATT TCGTTCAGGCTAGTAAGCGTTGGTCTCAGACGGCAACAATTATTGATATGTGTCCCGCCGATTGTGGGCGTGATGTCCTA AAACTTGTCGAGGTAAACAATCGGATTCCGGGACTTCATATAGTTGTAGCAACAGGCTTCCACCGCGAACACGTTTATCT AGAAACAAAATGCCACTGGGTGAGTCGCTATTCTGTGAACCAGATAGCTGATCTTCTTATAGCTGATATTGAAGAGGGAG TGGATGCCCATGACTATTCTGGACCAATTGTAGAAAGAACCCCTTATAAGGCTGGGGTTATAAAGTTTGCTTCTGCTTAT GGCCAGATTACTGAATGGGAGAAAAAGACCCAGGAAGCTGTGGCGATAGCTGCGAAGGTTACCGGTGCACCGATCAACAC ACATACAACTTTTGGCACAGCCGGTCTTGAACAGGCAAAGCGGTTTATTGAATTGGGTGTTGATCCAGATCAGGTTGCTA TAGGCCATATACAGCGAAATGCTGATGTGTACTATCTAGCACAGATACTAAAACTTGGCGTTTATCTCGAGCTTGATGGG ACGTATAGGATCAAATATCTCCCTGATAGTGCACGGGTAACGCTTGTGCGTGAACTTGGCAAGCAGGGTTTTGGCAAGCG ACTCTTGCTCGGTACCGATTCTGGAAAGCGGAGTTATCAAAAGGCTTACGGTGCGGTGAGTGGCATTGATTACGATCCTT CAGTATTCGCCCCTCGACTGCTGGATGAAGGTTTTGATCCTGATTATGTTGATGATCTGCTTATGTACAATGCACAAACT TTCTTTCAGGTCAGGCGGTAA
Upstream 100 bases:
>100_bases TGTTCCTGCTGGATTTTCTGCGTGCGGCATACTTTCACAGCACTTCATGCCAGGTTTTTCGTAATGGTTCGATTTTACGT AGTTTCCCATGGAGGTTGTT
Downstream 100 bases:
>100_bases TGACTCGCGCTGTTATAGAACATCCCTCGCGGCCGCTTCTTCAGGTTGCACTCGATACATTTGACCTTTCAAGCGCCCTG GGGCCTCTGCAAAAATCTAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 326; Mature: 325
Protein sequence:
>326_residues MGFVRTIKGDVSPDLLGCVNCHDHLIRTGAGEVYLDKDHLLDSVDKAVEEASYFVQASKRWSQTATIIDMCPADCGRDVL KLVEVNNRIPGLHIVVATGFHREHVYLETKCHWVSRYSVNQIADLLIADIEEGVDAHDYSGPIVERTPYKAGVIKFASAY GQITEWEKKTQEAVAIAAKVTGAPINTHTTFGTAGLEQAKRFIELGVDPDQVAIGHIQRNADVYYLAQILKLGVYLELDG TYRIKYLPDSARVTLVRELGKQGFGKRLLLGTDSGKRSYQKAYGAVSGIDYDPSVFAPRLLDEGFDPDYVDDLLMYNAQT FFQVRR
Sequences:
>Translated_326_residues MGFVRTIKGDVSPDLLGCVNCHDHLIRTGAGEVYLDKDHLLDSVDKAVEEASYFVQASKRWSQTATIIDMCPADCGRDVL KLVEVNNRIPGLHIVVATGFHREHVYLETKCHWVSRYSVNQIADLLIADIEEGVDAHDYSGPIVERTPYKAGVIKFASAY GQITEWEKKTQEAVAIAAKVTGAPINTHTTFGTAGLEQAKRFIELGVDPDQVAIGHIQRNADVYYLAQILKLGVYLELDG TYRIKYLPDSARVTLVRELGKQGFGKRLLLGTDSGKRSYQKAYGAVSGIDYDPSVFAPRLLDEGFDPDYVDDLLMYNAQT FFQVRR >Mature_325_residues GFVRTIKGDVSPDLLGCVNCHDHLIRTGAGEVYLDKDHLLDSVDKAVEEASYFVQASKRWSQTATIIDMCPADCGRDVLK LVEVNNRIPGLHIVVATGFHREHVYLETKCHWVSRYSVNQIADLLIADIEEGVDAHDYSGPIVERTPYKAGVIKFASAYG QITEWEKKTQEAVAIAAKVTGAPINTHTTFGTAGLEQAKRFIELGVDPDQVAIGHIQRNADVYYLAQILKLGVYLELDGT YRIKYLPDSARVTLVRELGKQGFGKRLLLGTDSGKRSYQKAYGAVSGIDYDPSVFAPRLLDEGFDPDYVDDLLMYNAQTF FQVRR
Specific function: Its Real Enzymatic Activity Is Not Yet Known. It Was Tested For General Esterase, Aminopeptidase, Sulfatase, Phosphatase, Carbonic Anhydrase, Phosphodiesterase, And Phosphotriesterase Activities With The Following Substrates: P- Nitrophenyl Acetate, L-Ala
COG id: COG1735
COG function: function code R; Predicted metal-dependent hydrolase with the TIM-barrel fold
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phosphotriesterase family [H]
Homologues:
Organism=Homo sapiens, GI20070186, Length=365, Percent_Identity=24.1095890410959, Blast_Score=73, Evalue=4e-13, Organism=Homo sapiens, GI47933341, Length=365, Percent_Identity=24.1095890410959, Blast_Score=73, Evalue=4e-13, Organism=Escherichia coli, GI1789780, Length=316, Percent_Identity=30.0632911392405, Blast_Score=135, Evalue=5e-33,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001559 [H]
Pfam domain/function: PF02126 PTE [H]
EC number: NA
Molecular weight: Translated: 36293; Mature: 36161
Theoretical pI: Translated: 6.00; Mature: 6.00
Prosite motif: PS01323 PHOSPHOTRIESTERASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGFVRTIKGDVSPDLLGCVNCHDHLIRTGAGEVYLDKDHLLDSVDKAVEEASYFVQASKR CCCCEECCCCCCHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHH WSQTATIIDMCPADCGRDVLKLVEVNNRIPGLHIVVATGFHREHVYLETKCHWVSRYSVN HHHHHHHEECCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEEEEEEEEHHCCHH QIADLLIADIEEGVDAHDYSGPIVERTPYKAGVIKFASAYGQITEWEKKTQEAVAIAAKV HHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHEE TGAPINTHTTFGTAGLEQAKRFIELGVDPDQVAIGHIQRNADVYYLAQILKLGVYLELDG CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEHCCCCCHHHHHHHHHCCEEEEECC TYRIKYLPDSARVTLVRELGKQGFGKRLLLGTDSGKRSYQKAYGAVSGIDYDPSVFAPRL EEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCHHH LDEGFDPDYVDDLLMYNAQTFFQVRR HHCCCCCHHHHHHHHHCCHHHHEECC >Mature Secondary Structure GFVRTIKGDVSPDLLGCVNCHDHLIRTGAGEVYLDKDHLLDSVDKAVEEASYFVQASKR CCCEECCCCCCHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHH WSQTATIIDMCPADCGRDVLKLVEVNNRIPGLHIVVATGFHREHVYLETKCHWVSRYSVN HHHHHHHEECCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEEEEEEEEHHCCHH QIADLLIADIEEGVDAHDYSGPIVERTPYKAGVIKFASAYGQITEWEKKTQEAVAIAAKV HHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHEE TGAPINTHTTFGTAGLEQAKRFIELGVDPDQVAIGHIQRNADVYYLAQILKLGVYLELDG CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEHCCCCCHHHHHHHHHCCEEEEECC TYRIKYLPDSARVTLVRELGKQGFGKRLLLGTDSGKRSYQKAYGAVSGIDYDPSVFAPRL EEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCHHH LDEGFDPDYVDDLLMYNAQTFFQVRR HHCCCCCHHHHHHHHHCCHHHHEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8948633 [H]