| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
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The map label for this gene is 28572741
Identifier: 28572741
GI number: 28572741
Start: 671258
End: 671836
Strand: Reverse
Name: 28572741
Synonym: TW593
Alternate gene names: NA
Gene position: 671836-671258 (Counterclockwise)
Preceding gene: 28572742
Following gene: 28572740
Centisome position: 72.56
GC content: 45.77
Gene sequence:
>579_bases ATGAAAGCTCTTATTGGTCTTGTGGCTGTAATTCTTATTGCCATTCCAAATGCTCCAGCTGCACTTGCTGATACTGGCAA TGTGGCTTCAGAATCAGCTGCGATTGATCGTTTCTATAACACTCTCAGCATTGCGCATTTGCCGAAGAAGACTCACCACA AAGGCGGGTCGCTTAACGAGACAACTTTTAAGGCCGGTGCCATTGATTTTATTTTTAAAACCGATTCATCAAAATCTCAC GGTTCCACACCTGAGATTCTGGAGGCTTATCTCAGAGTCAACTGGTTCACTCAGAAAGCTTTTGAAGTTGCAACGCTATT CACCGGCGCCGGCCTTGGTAAAGCGGCGGGTAAGGCTGCTGCAAAGAAACTGTTTAAGTTTCTGGCTGATAAGGCTGCTG GTAAACTTGTGAAGCAATTTTTGGAGCGTCTTGTTGTAAAAGCTGCCGATACCGCCGCAAATAAGGTTCTTCATTTTGGT ATAGATGCCCTGTCTTTGCCCTGCAAGGGCCGTAAACCCTATTACATTAATCTTATTTCTTTTGGCGGTCAGTGTGGTAC CCCCGCATCGCTTCGTTAG
Upstream 100 bases:
>100_bases TTTTGGGTGTACACTTTAATCCCGTGGGGTACTCGGCGCAGTTCACTGGTTTCCTGCTGCCTGTAAGACTCCTGAGTTTT GGGATATTTAGGGGGTTATC
Downstream 100 bases:
>100_bases TCTTAATTGGCCGTTAGTGCATGAAGATATTTGTACAGCGAGGATTGCCTTTGAGCCGCTGGCTCTAAATACTTGAAAGT GCCCTTCGGCGTGATGTATA
Product: secreted protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 192; Mature: 192
Protein sequence:
>192_residues MKALIGLVAVILIAIPNAPAALADTGNVASESAAIDRFYNTLSIAHLPKKTHHKGGSLNETTFKAGAIDFIFKTDSSKSH GSTPEILEAYLRVNWFTQKAFEVATLFTGAGLGKAAGKAAAKKLFKFLADKAAGKLVKQFLERLVVKAADTAANKVLHFG IDALSLPCKGRKPYYINLISFGGQCGTPASLR
Sequences:
>Translated_192_residues MKALIGLVAVILIAIPNAPAALADTGNVASESAAIDRFYNTLSIAHLPKKTHHKGGSLNETTFKAGAIDFIFKTDSSKSH GSTPEILEAYLRVNWFTQKAFEVATLFTGAGLGKAAGKAAAKKLFKFLADKAAGKLVKQFLERLVVKAADTAANKVLHFG IDALSLPCKGRKPYYINLISFGGQCGTPASLR >Mature_192_residues MKALIGLVAVILIAIPNAPAALADTGNVASESAAIDRFYNTLSIAHLPKKTHHKGGSLNETTFKAGAIDFIFKTDSSKSH GSTPEILEAYLRVNWFTQKAFEVATLFTGAGLGKAAGKAAAKKLFKFLADKAAGKLVKQFLERLVVKAADTAANKVLHFG IDALSLPCKGRKPYYINLISFGGQCGTPASLR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20348; Mature: 20348
Theoretical pI: Translated: 10.45; Mature: 10.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKALIGLVAVILIAIPNAPAALADTGNVASESAAIDRFYNTLSIAHLPKKTHHKGGSLNE CHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCC TTFKAGAIDFIFKTDSSKSHGSTPEILEAYLRVNWFTQKAFEVATLFTGAGLGKAAGKAA CEECCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH AKKLFKFLADKAAGKLVKQFLERLVVKAADTAANKVLHFGIDALSLPCKGRKPYYINLIS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCEEEEEEE FGGQCGTPASLR ECCCCCCCCCCC >Mature Secondary Structure MKALIGLVAVILIAIPNAPAALADTGNVASESAAIDRFYNTLSIAHLPKKTHHKGGSLNE CHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCC TTFKAGAIDFIFKTDSSKSHGSTPEILEAYLRVNWFTQKAFEVATLFTGAGLGKAAGKAA CEECCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH AKKLFKFLADKAAGKLVKQFLERLVVKAADTAANKVLHFGIDALSLPCKGRKPYYINLIS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCEEEEEEE FGGQCGTPASLR ECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA