| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
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The map label for this gene is ilvC
Identifier: 28572713
GI number: 28572713
Start: 603297
End: 604298
Strand: Reverse
Name: ilvC
Synonym: TW565
Alternate gene names: 28572713
Gene position: 604298-603297 (Counterclockwise)
Preceding gene: 28572714
Following gene: 28572712
Centisome position: 65.26
GC content: 44.81
Gene sequence:
>1002_bases ATGAGTGAAATAGGCACGAGGGTTTATACCGAATGTGATGCAGATTTATCGCTTATTCAAAATGTTCTGGTTGCTGTTAT TGGTTACGGATCGCAGGGTCATGCGCAAGCGCTGAATCTGCGTGATTCGGGAGTAAATGTTGTAATTGGTTTGAAGGAAA ATTCGGCTTCGCGGAAAAGCGCACAAGACTCGGGGTTTGAGGTTCTTTTGCCGCAAGAGGCAGCCAAAAAGGCGCAGCTA ATTGCTCTGCTTGTGCCAGATCCAGCACAGCGTGATGTTTATGAAAGTGCAATAAAACATAATCTCTCAGAAGGCGATGC TCTTTTGTTTTCACACGGATTTAACATCCGATACGGGTATATAACACCTCCAGATGGTGTTGATGTTCTTATGGTTGCCC CTAAAGGTCCTGGACATATGGTTAGACGTGAATATCTTGATAACCGCGGGACTCCGGCTGTGTTTGCTATTGAAAAGGAT GCAAGTGGTAGGTGTTTTGACCTTGCGCTTAGTTATGCAAAGGGCATAGGTGCTTTGCGTGCCGGGGCTATACAAACTAC ATTTACCGAAGAGACCGAGACGGATTTATTTGGCGAGCAGGCAGTTCTATGCGGCGGTCTTGAACAGCTGATCCAGTATG GCTATGAGACCTTGGTTGAGGCGGGTTATCAGCCAGAAGTTGCTTATTTTGAAGTTCTTCATGAATTGAAGCTAATCATT GATCTGATAGTTGAGGGTGGGCTTAGTAAATCACGCTGGAGTATTTCTGATACGGCAGAATACGGCAGTTATGTATCAGG TCCGCGTGTTATAGACAAACATGTCAAGGAAAATATGAAAAAAATACTTGGTGAGATTCGTTCTGGCGAGTTTGCTAATA GATTCATAAAGGATCAAGATTCAGGTGCGAATGAATTTACACAGCTCAGAGAGATTGCTGCCCGGCATCCAATAGAAGAG GTTGGTGCCAGGCTGCGCGCATTATTTTCGTGGAGTAAGTAA
Upstream 100 bases:
>100_bases TGTTGGACGCGCGCTTGGACAATTATGGATAATTGATCTGTAGTTTTGTTTTTTTAGATCTCAAGTATGTTTATGTGGTC TGGATTGTGAGGGGTTTGAA
Downstream 100 bases:
>100_bases AGAGGTTATCGGTGTATTTGGTCTGCGCTGTATATGTTGCGCCGTGGCCTTCTTGGTTATTGCCAAATGCGGCTATTTGG ATGTGTGAAATGGAAAAGCC
Product: ketol-acid reductoisomerase
Products: NA
Alternate protein names: Acetohydroxy-acid isomeroreductase; Alpha-keto-beta-hydroxylacil reductoisomerase
Number of amino acids: Translated: 333; Mature: 332
Protein sequence:
>333_residues MSEIGTRVYTECDADLSLIQNVLVAVIGYGSQGHAQALNLRDSGVNVVIGLKENSASRKSAQDSGFEVLLPQEAAKKAQL IALLVPDPAQRDVYESAIKHNLSEGDALLFSHGFNIRYGYITPPDGVDVLMVAPKGPGHMVRREYLDNRGTPAVFAIEKD ASGRCFDLALSYAKGIGALRAGAIQTTFTEETETDLFGEQAVLCGGLEQLIQYGYETLVEAGYQPEVAYFEVLHELKLII DLIVEGGLSKSRWSISDTAEYGSYVSGPRVIDKHVKENMKKILGEIRSGEFANRFIKDQDSGANEFTQLREIAARHPIEE VGARLRALFSWSK
Sequences:
>Translated_333_residues MSEIGTRVYTECDADLSLIQNVLVAVIGYGSQGHAQALNLRDSGVNVVIGLKENSASRKSAQDSGFEVLLPQEAAKKAQL IALLVPDPAQRDVYESAIKHNLSEGDALLFSHGFNIRYGYITPPDGVDVLMVAPKGPGHMVRREYLDNRGTPAVFAIEKD ASGRCFDLALSYAKGIGALRAGAIQTTFTEETETDLFGEQAVLCGGLEQLIQYGYETLVEAGYQPEVAYFEVLHELKLII DLIVEGGLSKSRWSISDTAEYGSYVSGPRVIDKHVKENMKKILGEIRSGEFANRFIKDQDSGANEFTQLREIAARHPIEE VGARLRALFSWSK >Mature_332_residues SEIGTRVYTECDADLSLIQNVLVAVIGYGSQGHAQALNLRDSGVNVVIGLKENSASRKSAQDSGFEVLLPQEAAKKAQLI ALLVPDPAQRDVYESAIKHNLSEGDALLFSHGFNIRYGYITPPDGVDVLMVAPKGPGHMVRREYLDNRGTPAVFAIEKDA SGRCFDLALSYAKGIGALRAGAIQTTFTEETETDLFGEQAVLCGGLEQLIQYGYETLVEAGYQPEVAYFEVLHELKLIID LIVEGGLSKSRWSISDTAEYGSYVSGPRVIDKHVKENMKKILGEIRSGEFANRFIKDQDSGANEFTQLREIAARHPIEEV GARLRALFSWSK
Specific function: Valine and isoleucine biosynthesis; second step. [C]
COG id: COG0059
COG function: function code EH; Ketol-acid reductoisomerase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ketol-acid reductoisomerase family
Homologues:
Organism=Escherichia coli, GI1790210, Length=317, Percent_Identity=32.807570977918, Blast_Score=138, Evalue=5e-34, Organism=Saccharomyces cerevisiae, GI6323387, Length=256, Percent_Identity=35.9375, Blast_Score=132, Evalue=8e-32,
Paralogues:
None
Copy number: 160 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1420 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 480 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): ILVC_TROW8 (Q83HI9)
Other databases:
- EMBL: BX251411 - RefSeq: NP_789493.1 - ProteinModelPortal: Q83HI9 - SMR: Q83HI9 - STRING: Q83HI9 - GeneID: 1064768 - GenomeReviews: BX072543_GR - KEGG: tws:TW565 - eggNOG: COG0059 - HOGENOM: HBG286525 - OMA: MAYAKGI - PhylomeDB: Q83HI9 - ProtClustDB: PRK05479 - BioCyc: TWHI218496:TW0538-MONOMER - HAMAP: MF_00435 - InterPro: IPR008927 - InterPro: IPR013023 - InterPro: IPR000506 - InterPro: IPR013328 - InterPro: IPR013116 - Gene3D: G3DSA:1.10.1040.10 - PANTHER: PTHR21371 - TIGRFAMs: TIGR00465
Pfam domain/function: PF01450 IlvC; PF07991 IlvN; SSF48179 6DGDH_C_like
EC number: =1.1.1.86
Molecular weight: Translated: 36487; Mature: 36356
Theoretical pI: Translated: 4.93; Mature: 4.93
Prosite motif: NA
Important sites: ACT_SITE 112-112
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEIGTRVYTECDADLSLIQNVLVAVIGYGSQGHAQALNLRDSGVNVVIGLKENSASRKS CCCCCCHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCC AQDSGFEVLLPQEAAKKAQLIALLVPDPAQRDVYESAIKHNLSEGDALLFSHGFNIRYGY CCCCCCEEEECHHHHCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCCEEEEEE ITPPDGVDVLMVAPKGPGHMVRREYLDNRGTPAVFAIEKDASGRCFDLALSYAKGIGALR ECCCCCCEEEEECCCCCCHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHH AGAIQTTFTEETETDLFGEQAVLCGGLEQLIQYGYETLVEAGYQPEVAYFEVLHELKLII CCCEEEEECCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH DLIVEGGLSKSRWSISDTAEYGSYVSGPRVIDKHVKENMKKILGEIRSGEFANRFIKDQD HHHHHCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCC SGANEFTQLREIAARHPIEEVGARLRALFSWSK CCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC >Mature Secondary Structure SEIGTRVYTECDADLSLIQNVLVAVIGYGSQGHAQALNLRDSGVNVVIGLKENSASRKS CCCCCHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCC AQDSGFEVLLPQEAAKKAQLIALLVPDPAQRDVYESAIKHNLSEGDALLFSHGFNIRYGY CCCCCCEEEECHHHHCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCCEEEEEE ITPPDGVDVLMVAPKGPGHMVRREYLDNRGTPAVFAIEKDASGRCFDLALSYAKGIGALR ECCCCCCEEEEECCCCCCHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHH AGAIQTTFTEETETDLFGEQAVLCGGLEQLIQYGYETLVEAGYQPEVAYFEVLHELKLII CCCEEEEECCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH DLIVEGGLSKSRWSISDTAEYGSYVSGPRVIDKHVKENMKKILGEIRSGEFANRFIKDQD HHHHHCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCC SGANEFTQLREIAARHPIEEVGARLRALFSWSK CCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12606174