Definition Tropheryma whipplei TW08/27, complete genome.
Accession NC_004551
Length 925,938

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The map label for this gene is 28572701

Identifier: 28572701

GI number: 28572701

Start: 589163

End: 589504

Strand: Reverse

Name: 28572701

Synonym: TW553

Alternate gene names: NA

Gene position: 589504-589163 (Counterclockwise)

Preceding gene: 28572704

Following gene: 28572700

Centisome position: 63.67

GC content: 45.61

Gene sequence:

>342_bases
TTGCGTGATGCTGTGCGTGTGTTGTTGTTTGTCTGGGAGGTGGGTGTGCCTTTAAGTGAGAGCGAACAGAAGGTCCTTGA
TGATCTTGAGCGTGATTTATACAACAGCGAGTCAGATATTCTCGCGGATGTTACATCAAGACCCGGTTTTAACCCGAGGC
TCATTGTATTCGGAGTTCTGACAGTTCTTTTTGGCGTTGGCATTATGGTCGCTGGAGTTCTTGTGCAGCTTCCGTTGGCA
TCGCTTTTTGGTTTTGCAATTATGTTTCTTGGTGTTTTTATGGCATTTGCACCCAGTAAGCCTAAGGGGGGATTTTTTAC
GCGGTTTTTATCAAAGCACTAG

Upstream 100 bases:

>100_bases
TTTATCCTGACAATGGCAGGGTACCTTTCTAGTAGGAAAAACAGACACATGAAAAACGGACACATGGAGTAGTCTTGATT
ATAGGTGACGCGCTTGTGCC

Downstream 100 bases:

>100_bases
TTGCATTGCGTATAACTTCGCGAATCTATACTTAGGCCAATCTATACCTTAGGCTTGTCTTTAGGTCAACTGTTGTTGTA
AATGGTGTGTATACCGTTCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 113; Mature: 113

Protein sequence:

>113_residues
MRDAVRVLLFVWEVGVPLSESEQKVLDDLERDLYNSESDILADVTSRPGFNPRLIVFGVLTVLFGVGIMVAGVLVQLPLA
SLFGFAIMFLGVFMAFAPSKPKGGFFTRFLSKH

Sequences:

>Translated_113_residues
MRDAVRVLLFVWEVGVPLSESEQKVLDDLERDLYNSESDILADVTSRPGFNPRLIVFGVLTVLFGVGIMVAGVLVQLPLA
SLFGFAIMFLGVFMAFAPSKPKGGFFTRFLSKH
>Mature_113_residues
MRDAVRVLLFVWEVGVPLSESEQKVLDDLERDLYNSESDILADVTSRPGFNPRLIVFGVLTVLFGVGIMVAGVLVQLPLA
SLFGFAIMFLGVFMAFAPSKPKGGFFTRFLSKH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12467; Mature: 12467

Theoretical pI: Translated: 5.82; Mature: 5.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDAVRVLLFVWEVGVPLSESEQKVLDDLERDLYNSESDILADVTSRPGFNPRLIVFGVL
CHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHH
TVLFGVGIMVAGVLVQLPLASLFGFAIMFLGVFMAFAPSKPKGGFFTRFLSKH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCC
>Mature Secondary Structure
MRDAVRVLLFVWEVGVPLSESEQKVLDDLERDLYNSESDILADVTSRPGFNPRLIVFGVL
CHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHH
TVLFGVGIMVAGVLVQLPLASLFGFAIMFLGVFMAFAPSKPKGGFFTRFLSKH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA