| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
Click here to switch to the map view.
The map label for this gene is 28572701
Identifier: 28572701
GI number: 28572701
Start: 589163
End: 589504
Strand: Reverse
Name: 28572701
Synonym: TW553
Alternate gene names: NA
Gene position: 589504-589163 (Counterclockwise)
Preceding gene: 28572704
Following gene: 28572700
Centisome position: 63.67
GC content: 45.61
Gene sequence:
>342_bases TTGCGTGATGCTGTGCGTGTGTTGTTGTTTGTCTGGGAGGTGGGTGTGCCTTTAAGTGAGAGCGAACAGAAGGTCCTTGA TGATCTTGAGCGTGATTTATACAACAGCGAGTCAGATATTCTCGCGGATGTTACATCAAGACCCGGTTTTAACCCGAGGC TCATTGTATTCGGAGTTCTGACAGTTCTTTTTGGCGTTGGCATTATGGTCGCTGGAGTTCTTGTGCAGCTTCCGTTGGCA TCGCTTTTTGGTTTTGCAATTATGTTTCTTGGTGTTTTTATGGCATTTGCACCCAGTAAGCCTAAGGGGGGATTTTTTAC GCGGTTTTTATCAAAGCACTAG
Upstream 100 bases:
>100_bases TTTATCCTGACAATGGCAGGGTACCTTTCTAGTAGGAAAAACAGACACATGAAAAACGGACACATGGAGTAGTCTTGATT ATAGGTGACGCGCTTGTGCC
Downstream 100 bases:
>100_bases TTGCATTGCGTATAACTTCGCGAATCTATACTTAGGCCAATCTATACCTTAGGCTTGTCTTTAGGTCAACTGTTGTTGTA AATGGTGTGTATACCGTTCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 113; Mature: 113
Protein sequence:
>113_residues MRDAVRVLLFVWEVGVPLSESEQKVLDDLERDLYNSESDILADVTSRPGFNPRLIVFGVLTVLFGVGIMVAGVLVQLPLA SLFGFAIMFLGVFMAFAPSKPKGGFFTRFLSKH
Sequences:
>Translated_113_residues MRDAVRVLLFVWEVGVPLSESEQKVLDDLERDLYNSESDILADVTSRPGFNPRLIVFGVLTVLFGVGIMVAGVLVQLPLA SLFGFAIMFLGVFMAFAPSKPKGGFFTRFLSKH >Mature_113_residues MRDAVRVLLFVWEVGVPLSESEQKVLDDLERDLYNSESDILADVTSRPGFNPRLIVFGVLTVLFGVGIMVAGVLVQLPLA SLFGFAIMFLGVFMAFAPSKPKGGFFTRFLSKH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12467; Mature: 12467
Theoretical pI: Translated: 5.82; Mature: 5.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRDAVRVLLFVWEVGVPLSESEQKVLDDLERDLYNSESDILADVTSRPGFNPRLIVFGVL CHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHH TVLFGVGIMVAGVLVQLPLASLFGFAIMFLGVFMAFAPSKPKGGFFTRFLSKH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCC >Mature Secondary Structure MRDAVRVLLFVWEVGVPLSESEQKVLDDLERDLYNSESDILADVTSRPGFNPRLIVFGVL CHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHH TVLFGVGIMVAGVLVQLPLASLFGFAIMFLGVFMAFAPSKPKGGFFTRFLSKH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA