| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
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The map label for this gene is 28572697
Identifier: 28572697
GI number: 28572697
Start: 586618
End: 587073
Strand: Reverse
Name: 28572697
Synonym: TW549
Alternate gene names: NA
Gene position: 587073-586618 (Counterclockwise)
Preceding gene: 28572698
Following gene: 28572696
Centisome position: 63.4
GC content: 41.45
Gene sequence:
>456_bases ATGATGTACAGGGTATCTGATATACGCTATAAGCGGCTGGTTATGTTTGCAGCAACTCTTGTTGTTGTCTTTGTTATTTC CCAGTTGGCTTTGAGTTCTGTAAGTGGATCATACGCATTTCACGTGAATAAACTGCGCAATGAGTCGCAGACATTGTTGC TTGATAAAAGTGAGGCGCAAAGGCAGATAGCTGTTTATAGTTCACCGCAGTATTTGGTTTCGCGTCTTAGAGAATTAGGA ATGACCGGCAGTATGCATCCGGCATATTTACGGCTTTCTGATGGTTCTGTCTTGGGTAAGCCTTCTGTTGTCAATATAAA TGACAGTTTTGATATGGGAAATCTTGTATCTAATGATTTATTATCTGGGATTCCAAAGGTTATTCATACGGTAGATGAGA AACAGCTTGCCGGGCTTTTGTCTCAAATGCTGTTTCCCGCGCCATTGACGAATTGA
Upstream 100 bases:
>100_bases AGATTGCAAATAATCCGCGTGCAAGCAGCGCTCATCTAAGGGCGGTGGAACGGGTTCATTCTCATTCACAAGCTGAAGCC CAGATAGTCGAGCCCCGCGC
Downstream 100 bases:
>100_bases TGATTGACGAATTGATGTCAGAATTACTTCGAGTGTACATTGCTTATTGTTGAGTGACTATTATTTAGACTGATGAAAAG GAGTTCAAGTCGGGGTATTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 151; Mature: 151
Protein sequence:
>151_residues MMYRVSDIRYKRLVMFAATLVVVFVISQLALSSVSGSYAFHVNKLRNESQTLLLDKSEAQRQIAVYSSPQYLVSRLRELG MTGSMHPAYLRLSDGSVLGKPSVVNINDSFDMGNLVSNDLLSGIPKVIHTVDEKQLAGLLSQMLFPAPLTN
Sequences:
>Translated_151_residues MMYRVSDIRYKRLVMFAATLVVVFVISQLALSSVSGSYAFHVNKLRNESQTLLLDKSEAQRQIAVYSSPQYLVSRLRELG MTGSMHPAYLRLSDGSVLGKPSVVNINDSFDMGNLVSNDLLSGIPKVIHTVDEKQLAGLLSQMLFPAPLTN >Mature_151_residues MMYRVSDIRYKRLVMFAATLVVVFVISQLALSSVSGSYAFHVNKLRNESQTLLLDKSEAQRQIAVYSSPQYLVSRLRELG MTGSMHPAYLRLSDGSVLGKPSVVNINDSFDMGNLVSNDLLSGIPKVIHTVDEKQLAGLLSQMLFPAPLTN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16693; Mature: 16693
Theoretical pI: Translated: 9.68; Mature: 9.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.6 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.6 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMYRVSDIRYKRLVMFAATLVVVFVISQLALSSVSGSYAFHVNKLRNESQTLLLDKSEAQ CCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCEEEEECHHHH RQIAVYSSPQYLVSRLRELGMTGSMHPAYLRLSDGSVLGKPSVVNINDSFDMGNLVSNDL HEEEEECCHHHHHHHHHHHCCCCCCCCEEEEECCCCEECCCCEEECCCCCCCCHHHHHHH LSGIPKVIHTVDEKQLAGLLSQMLFPAPLTN HHHHHHHHHHCCHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MMYRVSDIRYKRLVMFAATLVVVFVISQLALSSVSGSYAFHVNKLRNESQTLLLDKSEAQ CCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCEEEEECHHHH RQIAVYSSPQYLVSRLRELGMTGSMHPAYLRLSDGSVLGKPSVVNINDSFDMGNLVSNDL HEEEEECCHHHHHHHHHHHCCCCCCCCEEEEECCCCEECCCCEEECCCCCCCCHHHHHHH LSGIPKVIHTVDEKQLAGLLSQMLFPAPLTN HHHHHHHHHHCCHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA