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The map label for this gene is yebC [C]

Identifier: 28572653

GI number: 28572653

Start: 542666

End: 543424

Strand: Reverse

Name: yebC [C]

Synonym: TW504

Alternate gene names: 28572653

Gene position: 543424-542666 (Counterclockwise)

Preceding gene: 28572654

Following gene: 28572652

Centisome position: 58.69

GC content: 45.98

Gene sequence:

>759_bases
ATGTCAGGACATTCAAAATGGGCAACAATAAAGCGCAAAAAGGCGGTTAATGATGCTCAAAGATCAAAGAATTTCGCGAA
GCTTATAAGACTTATTGAGGTCGCCGCTAAGCAAGGGGGGCCTGATCTTGCGGGTAACCCGGGCCTTGCTGAAGCTGTTC
AAAAAGCCAAAAAAAATTCTGTGCCTAACGATAATATCGACAGGGCGATAAAACGTGGCTCGGGCCTGACTGGCGAGCAC
ATAAATTACGTGAGTCTTGTCTACGAAGTAAAGGCTTTTGATGGTGTTGCACTATTGGTTGAATGCCTTACTGACAACAA
AAACCGATGTGCGGCTGGTATTCGTTCCATTGTTACGCGATCCGGTTGCTCTATGGTGAATCCCGGCAGTCTTGCGTACA
ACTTTAAGAGGAAAGGCATTGTTGTTCTTCAGGACCGTGATGCGAATGGAAATCTTCTCTCTGAAGATCTTGTCTTGTCG
GCGGTTCTTGAAGCCGAAGTTGATGATATTGTTCCAACCGGAGACTGCGGATTTGAGATTATTGCCGAGCCGTCAAATTT
GTCTGCCGTCTGTAACGCCCTGAGGGATAGTGGGATACAGTACAGGTCAGTAGAAACGGTGTATGTACCAAACTCGACTG
TTTCTTTGCCAGAGCAAAAATACGATCGGATTATTCGCATGATAGAAGCTCTCGAGGAGAGTGATGATGTTCAGGGTGTC
TATACAAATCTTTCCGGGAAAGACCTCGCATGCGAATAA

Upstream 100 bases:

>100_bases
CGAGCTTACCGGGGGTGCAGCCGTGCATGAATATTTTTTACATCTGGGTCTAGAATAGAGCTCAGGCTATTGGTATGTCA
TAATCGATACACGGTGATGT

Downstream 100 bases:

>100_bases
TGGCTGTTGATCCTGGCTTGACCAATTGTGGAGTGGCCGTTGTAAATGCGACCGGGCCTCTTTCTCTTGAGCTCTTGGCG
GTAAAAGTTTTTCATACCGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 251

Protein sequence:

>252_residues
MSGHSKWATIKRKKAVNDAQRSKNFAKLIRLIEVAAKQGGPDLAGNPGLAEAVQKAKKNSVPNDNIDRAIKRGSGLTGEH
INYVSLVYEVKAFDGVALLVECLTDNKNRCAAGIRSIVTRSGCSMVNPGSLAYNFKRKGIVVLQDRDANGNLLSEDLVLS
AVLEAEVDDIVPTGDCGFEIIAEPSNLSAVCNALRDSGIQYRSVETVYVPNSTVSLPEQKYDRIIRMIEALEESDDVQGV
YTNLSGKDLACE

Sequences:

>Translated_252_residues
MSGHSKWATIKRKKAVNDAQRSKNFAKLIRLIEVAAKQGGPDLAGNPGLAEAVQKAKKNSVPNDNIDRAIKRGSGLTGEH
INYVSLVYEVKAFDGVALLVECLTDNKNRCAAGIRSIVTRSGCSMVNPGSLAYNFKRKGIVVLQDRDANGNLLSEDLVLS
AVLEAEVDDIVPTGDCGFEIIAEPSNLSAVCNALRDSGIQYRSVETVYVPNSTVSLPEQKYDRIIRMIEALEESDDVQGV
YTNLSGKDLACE
>Mature_251_residues
SGHSKWATIKRKKAVNDAQRSKNFAKLIRLIEVAAKQGGPDLAGNPGLAEAVQKAKKNSVPNDNIDRAIKRGSGLTGEHI
NYVSLVYEVKAFDGVALLVECLTDNKNRCAAGIRSIVTRSGCSMVNPGSLAYNFKRKGIVVLQDRDANGNLLSEDLVLSA
VLEAEVDDIVPTGDCGFEIIAEPSNLSAVCNALRDSGIQYRSVETVYVPNSTVSLPEQKYDRIIRMIEALEESDDVQGVY
TNLSGKDLACE

Specific function: Unknown

COG id: COG0217

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TACO1 family

Homologues:

Organism=Homo sapiens, GI27545315, Length=247, Percent_Identity=29.5546558704453, Blast_Score=114, Evalue=7e-26,
Organism=Escherichia coli, GI1788171, Length=243, Percent_Identity=36.2139917695473, Blast_Score=166, Evalue=1e-42,
Organism=Escherichia coli, GI1788294, Length=242, Percent_Identity=34.297520661157, Blast_Score=120, Evalue=9e-29,
Organism=Caenorhabditis elegans, GI17556100, Length=247, Percent_Identity=23.8866396761134, Blast_Score=75, Evalue=3e-14,
Organism=Saccharomyces cerevisiae, GI6321458, Length=268, Percent_Identity=33.5820895522388, Blast_Score=111, Evalue=1e-25,
Organism=Drosophila melanogaster, GI24583305, Length=252, Percent_Identity=24.6031746031746, Blast_Score=73, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y266_TROWT (P67191)

Other databases:

- EMBL:   AE014184
- RefSeq:   NP_787394.1
- ProteinModelPortal:   P67191
- SMR:   P67191
- STRING:   P67191
- GeneID:   1089516
- GenomeReviews:   AE014184_GR
- KEGG:   twh:TWT266
- eggNOG:   COG0217
- HOGENOM:   HBG715231
- OMA:   VYANFDI
- ProtClustDB:   PRK00110
- BioCyc:   TWHI203267:TW266-MONOMER
- HAMAP:   MF_00693
- InterPro:   IPR002876
- InterPro:   IPR017856
- Gene3D:   G3DSA:1.10.10.200
- PANTHER:   PTHR12532
- TIGRFAMs:   TIGR01033

Pfam domain/function: PF01709 DUF28; SSF75625 DUF28

EC number: NA

Molecular weight: Translated: 27243; Mature: 27112

Theoretical pI: Translated: 5.90; Mature: 5.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGHSKWATIKRKKAVNDAQRSKNFAKLIRLIEVAAKQGGPDLAGNPGLAEAVQKAKKNS
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCC
VPNDNIDRAIKRGSGLTGEHINYVSLVYEVKAFDGVALLVECLTDNKNRCAAGIRSIVTR
CCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHH
SGCSMVNPGSLAYNFKRKGIVVLQDRDANGNLLSEDLVLSAVLEAEVDDIVPTGDCGFEI
CCCCCCCCCCEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEE
IAEPSNLSAVCNALRDSGIQYRSVETVYVPNSTVSLPEQKYDRIIRMIEALEESDDVQGV
EECCCCHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCEE
YTNLSGKDLACE
EECCCCCCCCCC
>Mature Secondary Structure 
SGHSKWATIKRKKAVNDAQRSKNFAKLIRLIEVAAKQGGPDLAGNPGLAEAVQKAKKNS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCC
VPNDNIDRAIKRGSGLTGEHINYVSLVYEVKAFDGVALLVECLTDNKNRCAAGIRSIVTR
CCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHH
SGCSMVNPGSLAYNFKRKGIVVLQDRDANGNLLSEDLVLSAVLEAEVDDIVPTGDCGFEI
CCCCCCCCCCEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEE
IAEPSNLSAVCNALRDSGIQYRSVETVYVPNSTVSLPEQKYDRIIRMIEALEESDDVQGV
EECCCCHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCEE
YTNLSGKDLACE
EECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12902375