| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
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The map label for this gene is 28572599
Identifier: 28572599
GI number: 28572599
Start: 488391
End: 488660
Strand: Direct
Name: 28572599
Synonym: TW449
Alternate gene names: NA
Gene position: 488391-488660 (Clockwise)
Preceding gene: 28572598
Following gene: 28572605
Centisome position: 52.75
GC content: 48.89
Gene sequence:
>270_bases ATGATTGATGTTCTTGATCACTTTGCTACAACGGTTATTGACTCTGCGCGCTCGTATGGACCGTGTCATGATGCTATAGA GGATATGGTCGGACAGGATGATGGCGATGGTCTTGCGCACTATGCCAGGAAGGGGGAGATAACTCGTTCATATGTTATGG GCATACCCGTCATTGCCCTGTGTGGGAAGAGGTGGCTTCCTTCCAGGCTACCTGACAAACTACCAATCTGTCAGACCTGC AGTGATATATACAACAGCCTGAGCGATTGA
Upstream 100 bases:
>100_bases CTGACCCAGCGGCCAGTACCCGCGGGGTAAATCAACAAATGATTTACAAACAACCCTTAAACACCAATGGCAATCAACTG CCCTCGTATACACTACATAT
Downstream 100 bases:
>100_bases TTAGCCTTCTGTATCTGCCAGAAATGTACTTATATCGCCAACAAATTTGATATTGCCTTCTGGAATTGGGTCAATTGCTG CTCTGGCTACTTCCGCCGCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 89; Mature: 89
Protein sequence:
>89_residues MIDVLDHFATTVIDSARSYGPCHDAIEDMVGQDDGDGLAHYARKGEITRSYVMGIPVIALCGKRWLPSRLPDKLPICQTC SDIYNSLSD
Sequences:
>Translated_89_residues MIDVLDHFATTVIDSARSYGPCHDAIEDMVGQDDGDGLAHYARKGEITRSYVMGIPVIALCGKRWLPSRLPDKLPICQTC SDIYNSLSD >Mature_89_residues MIDVLDHFATTVIDSARSYGPCHDAIEDMVGQDDGDGLAHYARKGEITRSYVMGIPVIALCGKRWLPSRLPDKLPICQTC SDIYNSLSD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 9800; Mature: 9800
Theoretical pI: Translated: 4.68; Mature: 4.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.5 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 7.9 %Cys+Met (Translated Protein) 4.5 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 7.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIDVLDHFATTVIDSARSYGPCHDAIEDMVGQDDGDGLAHYARKGEITRSYVMGIPVIAL CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHH CGKRWLPSRLPDKLPICQTCSDIYNSLSD HCCCCCCCCCCCCCCHHHHHHHHHHHCCC >Mature Secondary Structure MIDVLDHFATTVIDSARSYGPCHDAIEDMVGQDDGDGLAHYARKGEITRSYVMGIPVIAL CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHH CGKRWLPSRLPDKLPICQTCSDIYNSLSD HCCCCCCCCCCCCCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA