| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
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The map label for this gene is 28572577
Identifier: 28572577
GI number: 28572577
Start: 463366
End: 464247
Strand: Direct
Name: 28572577
Synonym: TW425
Alternate gene names: NA
Gene position: 463366-464247 (Clockwise)
Preceding gene: 28572576
Following gene: 28572578
Centisome position: 50.04
GC content: 47.62
Gene sequence:
>882_bases ATGGATTTAACTAAGAGGGAGCGACGTGATCGCGCCCGGGAGAAGGCCAGGCACATACGTGACCAACAGGTTAAATCCGA GAGGCGCGCGCGGTGGTTTATCCAGGGCGGTGTTCTACTTGCAATATTTGCGGTTGTAAGTGCGGTAGTTCTTGTTATTG TTTTTTCTGTTCCTTCTCAGGCAGCTGGTCCACGTAATATGGTTTCTGATGGTATTGTTTTTGGGCCAAAAGGGGAACCA ATTTTAACTGAGGGTATCCATCCTGAGTTCGGTCCTACTCCTTACTATGAAAGTGCGGAGAATGGAAAGATAAACATCAG GGTTTACGCTGACTACAGCTGTCATTACTGCAAGCAGTTCGAAGAGACTACCTCCGCGTATCTCAGCAGTTTATTGGATG GCGGTAATGCAACCCTGTCTATCCACCCAATTGCGATATTTGGTTCAGGGCTTAATCGTTATTCGGTTAGGGCGACAAAT GCCGTTGCGTGTGTTGCAAACTACTCTCCGAAATATTTTCTTTCTGTTAATGCCGCCTTGTTTCAACACCAAGAATCTGC ACTTCAGAACAGAGGTTTGGGCAATGATGAACTTTGGACTATTGCCTCTGCATCCGGGGCTTCTGACCCAAAGGTTGAGG AGTGTATAAAGCACGAGATGTTTTCAGATTGGGCCGTTGCTGCTACCGAAAGGGCTACCAGGTATATTCTTCCTAATAGT GACAATGTCTCCCTCAGGGGCACCCCAACTGTTCTTGTGAATGGTGCCCTTTATACTGGCTCTCCGGGTGATCTTGACTC TTTTAAGCGCTTTATTGCCGAATCTCAGGGCAAGACTTTCAGTACAAAACCGCCGAGTCACACAGGCGCTCGGAATACCT AG
Upstream 100 bases:
>100_bases CAAGAGGTTTTCTCAAAAACTGCACTTTGTGCTTCAATAGGAGAGTAGACTCGGGTGTTTTGCCCCTTATTGTTTTGAAG AATTCTTTGGGTTTAGCTAG
Downstream 100 bases:
>100_bases ACATGCGAAGGGCTGTATTGTAATCTTGTGTGCCGTTTTATCCTGCCAGCTTGGCGCAATTGGTAGCGCACCCGACTTGT AATCGGGCGGTTATGGGTTC
Product: secreted protein
Products: NA
Alternate protein names: Protein-Disulfide Isomerase-Like Protein; DSBA-Like Thioredoxin Domain-Containing Protein; Secreted Protein
Number of amino acids: Translated: 293; Mature: 293
Protein sequence:
>293_residues MDLTKRERRDRAREKARHIRDQQVKSERRARWFIQGGVLLAIFAVVSAVVLVIVFSVPSQAAGPRNMVSDGIVFGPKGEP ILTEGIHPEFGPTPYYESAENGKINIRVYADYSCHYCKQFEETTSAYLSSLLDGGNATLSIHPIAIFGSGLNRYSVRATN AVACVANYSPKYFLSVNAALFQHQESALQNRGLGNDELWTIASASGASDPKVEECIKHEMFSDWAVAATERATRYILPNS DNVSLRGTPTVLVNGALYTGSPGDLDSFKRFIAESQGKTFSTKPPSHTGARNT
Sequences:
>Translated_293_residues MDLTKRERRDRAREKARHIRDQQVKSERRARWFIQGGVLLAIFAVVSAVVLVIVFSVPSQAAGPRNMVSDGIVFGPKGEP ILTEGIHPEFGPTPYYESAENGKINIRVYADYSCHYCKQFEETTSAYLSSLLDGGNATLSIHPIAIFGSGLNRYSVRATN AVACVANYSPKYFLSVNAALFQHQESALQNRGLGNDELWTIASASGASDPKVEECIKHEMFSDWAVAATERATRYILPNS DNVSLRGTPTVLVNGALYTGSPGDLDSFKRFIAESQGKTFSTKPPSHTGARNT >Mature_293_residues MDLTKRERRDRAREKARHIRDQQVKSERRARWFIQGGVLLAIFAVVSAVVLVIVFSVPSQAAGPRNMVSDGIVFGPKGEP ILTEGIHPEFGPTPYYESAENGKINIRVYADYSCHYCKQFEETTSAYLSSLLDGGNATLSIHPIAIFGSGLNRYSVRATN AVACVANYSPKYFLSVNAALFQHQESALQNRGLGNDELWTIASASGASDPKVEECIKHEMFSDWAVAATERATRYILPNS DNVSLRGTPTVLVNGALYTGSPGDLDSFKRFIAESQGKTFSTKPPSHTGARNT
Specific function: Unknown
COG id: COG1651
COG function: function code O; Protein-disulfide isomerase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32109; Mature: 32109
Theoretical pI: Translated: 8.58; Mature: 8.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDLTKRERRDRAREKARHIRDQQVKSERRARWFIQGGVLLAIFAVVSAVVLVIVFSVPSQ CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHCCCCC AAGPRNMVSDGIVFGPKGEPILTEGIHPEFGPTPYYESAENGKINIRVYADYSCHYCKQF CCCCHHHHCCCEEECCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHH EETTSAYLSSLLDGGNATLSIHPIAIFGSGLNRYSVRATNAVACVANYSPKYFLSVNAAL HHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCEEEEECCEEEEEECCCCEEEEEEHHHH FQHQESALQNRGLGNDELWTIASASGASDPKVEECIKHEMFSDWAVAATERATRYILPNS HHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCHHHHHHHCCEEEECCCC DNVSLRGTPTVLVNGALYTGSPGDLDSFKRFIAESQGKTFSTKPPSHTGARNT CCEEECCCCEEEEECEEEECCCCCHHHHHHHHHHCCCCEECCCCCCCCCCCCC >Mature Secondary Structure MDLTKRERRDRAREKARHIRDQQVKSERRARWFIQGGVLLAIFAVVSAVVLVIVFSVPSQ CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHCCCCC AAGPRNMVSDGIVFGPKGEPILTEGIHPEFGPTPYYESAENGKINIRVYADYSCHYCKQF CCCCHHHHCCCEEECCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHH EETTSAYLSSLLDGGNATLSIHPIAIFGSGLNRYSVRATNAVACVANYSPKYFLSVNAAL HHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCEEEEECCEEEEEECCCCEEEEEEHHHH FQHQESALQNRGLGNDELWTIASASGASDPKVEECIKHEMFSDWAVAATERATRYILPNS HHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCHHHHHHHCCEEEECCCC DNVSLRGTPTVLVNGALYTGSPGDLDSFKRFIAESQGKTFSTKPPSHTGARNT CCEEECCCCEEEEECEEEECCCCCHHHHHHHHHHCCCCEECCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA