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The map label for this gene is yjfH [C]

Identifier: 28572576

GI number: 28572576

Start: 462460

End: 463251

Strand: Direct

Name: yjfH [C]

Synonym: TW424

Alternate gene names: 28572576

Gene position: 462460-463251 (Clockwise)

Preceding gene: 28572575

Following gene: 28572577

Centisome position: 49.95

GC content: 44.7

Gene sequence:

>792_bases
ATGAGACGAAAAAACAGGTCAGTTTCTAGCTCTTCAAGAAGGTCCGGGTTACCAAACCAGATTGAGCACAATACGATTGT
TGGAATAAATCCGGTATACGAGGCGTTGCGTGAAAGGGTGCCATCGATAAAGCTCCTTATAGATAAAAGTTTTGCGCTTA
AACACAATCCACGAGTGTCAAAAATCATGAATTATTCAGATATTCCTCATATATTTGTACCTCGCAGCACACTCGATAGA
TTGACAGACTTGCCTCATCAGGGTGTCGCGCTACTGTGCAAGTCTTATAGACCCAGTCGCGCGGAAGAGCTCTTGAAACA
GACTTGGCCCCGTCCTCCTTTATTCATTGCATGCGATCAGGTTACAGATCCTCGCAATCTTGGTGCGATTGTACGCTCAG
CGGCTGCCTTTCGCGCATCGGCTGTTCTAATAGGCAAGAATCGCAGTGCTCGTGTAACACCTATGGTATGGAAAGCGAGT
GCTGGGGCAGTTGGCAAATTACCCATTGCGGAGGTGGGGAATCTAACCCGTTATATTGTCCGTTTTAGAGAGTACGGTGG
TTTTGTACTGGGTTTAGATTCGAATTCTAAGACTCCAATTGATAAAAGTGTTTTTTTAAAAAAGGAGGACAAACGTGCAC
TTCTGCTTATTGTTGGCAGCGAAGGTAGCGGCATAAGTCATCTTGTAAAAAAACACTGTGATGAACTGCTTACAATTCCG
ACGGATGCTTCTGTTGATTCTCTAAATGTGTCGGTTGCTGTCAGTATAGCCTTGTATGAACTGCAGCGGTAA

Upstream 100 bases:

>100_bases
CTAAGGGTGATTTTTATACTTCAGACCTTTTGCGAGAATTATTAGCCGAGGCGGATATAAGCGTTTCAGACGGTCATGTG
TCTTATGGTAGTCCGCGGGG

Downstream 100 bases:

>100_bases
AGTGCTTTTTGCGACAAGAGGTTTTCTCAAAAACTGCACTTTGTGCTTCAATAGGAGAGTAGACTCGGGTGTTTTGCCCC
TTATTGTTTTGAAGAATTCT

Product: rRNA methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MRRKNRSVSSSSRRSGLPNQIEHNTIVGINPVYEALRERVPSIKLLIDKSFALKHNPRVSKIMNYSDIPHIFVPRSTLDR
LTDLPHQGVALLCKSYRPSRAEELLKQTWPRPPLFIACDQVTDPRNLGAIVRSAAAFRASAVLIGKNRSARVTPMVWKAS
AGAVGKLPIAEVGNLTRYIVRFREYGGFVLGLDSNSKTPIDKSVFLKKEDKRALLLIVGSEGSGISHLVKKHCDELLTIP
TDASVDSLNVSVAVSIALYELQR

Sequences:

>Translated_263_residues
MRRKNRSVSSSSRRSGLPNQIEHNTIVGINPVYEALRERVPSIKLLIDKSFALKHNPRVSKIMNYSDIPHIFVPRSTLDR
LTDLPHQGVALLCKSYRPSRAEELLKQTWPRPPLFIACDQVTDPRNLGAIVRSAAAFRASAVLIGKNRSARVTPMVWKAS
AGAVGKLPIAEVGNLTRYIVRFREYGGFVLGLDSNSKTPIDKSVFLKKEDKRALLLIVGSEGSGISHLVKKHCDELLTIP
TDASVDSLNVSVAVSIALYELQR
>Mature_263_residues
MRRKNRSVSSSSRRSGLPNQIEHNTIVGINPVYEALRERVPSIKLLIDKSFALKHNPRVSKIMNYSDIPHIFVPRSTLDR
LTDLPHQGVALLCKSYRPSRAEELLKQTWPRPPLFIACDQVTDPRNLGAIVRSAAAFRASAVLIGKNRSARVTPMVWKAS
AGAVGKLPIAEVGNLTRYIVRFREYGGFVLGLDSNSKTPIDKSVFLKKEDKRALLLIVGSEGSGISHLVKKHCDELLTIP
TDASVDSLNVSVAVSIALYELQR

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI40068479, Length=254, Percent_Identity=30.3149606299213, Blast_Score=88, Evalue=7e-18,
Organism=Escherichia coli, GI1790623, Length=246, Percent_Identity=34.9593495934959, Blast_Score=112, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI17555908, Length=257, Percent_Identity=26.4591439688716, Blast_Score=76, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6324775, Length=163, Percent_Identity=29.4478527607362, Blast_Score=72, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004441
- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 29129; Mature: 29129

Theoretical pI: Translated: 10.73; Mature: 10.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRKNRSVSSSSRRSGLPNQIEHNTIVGINPVYEALRERVPSIKLLIDKSFALKHNPRVS
CCCCCCCCCCCHHHCCCCCCCCCCEEEECHHHHHHHHHHCCCEEEEEECCCCCCCCCCHH
KIMNYSDIPHIFVPRSTLDRLTDLPHQGVALLCKSYRPSRAEELLKQTWPRPPLFIACDQ
HHCCCCCCCEEEECHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCEEEEECC
VTDPRNLGAIVRSAAAFRASAVLIGKNRSARVTPMVWKASAGAVGKLPIAEVGNLTRYIV
CCCCHHHHHHHHHHHHHHHEEEEEECCCCCEECEEEEECCCCCCCCCCHHHHHHHHHHHH
RFREYGGFVLGLDSNSKTPIDKSVFLKKEDKRALLLIVGSEGSGISHLVKKHCDELLTIP
HHHHHCCEEEEECCCCCCCCCHHEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHEECC
TDASVDSLNVSVAVSIALYELQR
CCCCCCCEEEEEEEEEEEEEECC
>Mature Secondary Structure
MRRKNRSVSSSSRRSGLPNQIEHNTIVGINPVYEALRERVPSIKLLIDKSFALKHNPRVS
CCCCCCCCCCCHHHCCCCCCCCCCEEEECHHHHHHHHHHCCCEEEEEECCCCCCCCCCHH
KIMNYSDIPHIFVPRSTLDRLTDLPHQGVALLCKSYRPSRAEELLKQTWPRPPLFIACDQ
HHCCCCCCCEEEECHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCEEEEECC
VTDPRNLGAIVRSAAAFRASAVLIGKNRSARVTPMVWKASAGAVGKLPIAEVGNLTRYIV
CCCCHHHHHHHHHHHHHHHEEEEEECCCCCEECEEEEECCCCCCCCCCHHHHHHHHHHHH
RFREYGGFVLGLDSNSKTPIDKSVFLKKEDKRALLLIVGSEGSGISHLVKKHCDELLTIP
HHHHHCCEEEEECCCCCCCCCHHEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHEECC
TDASVDSLNVSVAVSIALYELQR
CCCCCCCEEEEEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA