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The map label for this gene is yqgF [C]

Identifier: 28572547

GI number: 28572547

Start: 430659

End: 431096

Strand: Direct

Name: yqgF [C]

Synonym: TW394

Alternate gene names: 28572547

Gene position: 430659-431096 (Clockwise)

Preceding gene: 28572546

Following gene: 28572548

Centisome position: 46.51

GC content: 47.95

Gene sequence:

>438_bases
ATGGTTAAATCAGTAGCTGACCGGTTTTTTTTGGGTCTTGATTTTGGGTCCACACGTATTGGCGTTGCTAGGAATTGCGG
CAGTCTGGCGGTTCCCGTTGGCGTTCTTCCCCGCGCCTCCTGTGCTGAGATTCTTGGTTATATCAGTCGGTATTCTATTG
ATGAGGTTGTTATAGGCCTCCCGTTAACTCTTGCTGGAAAGGAAAAACAGTCAGCGCGGTTGGCAAAGGAGTTTTCACGC
TTTCTGGTTTCTTCTGGTGTACAGGTGAGGTTTTTTGATGAGCGCTTCACAACTGTTATCGCGACACAAAAGTTTTATTC
CCTTGGGAAAGGTGTGAAGCAGATTCGCAAGTGTGTCGACGCCGCCGCCGCGACTGTTATGTTGCAACTCTTCCTTGATA
TGGAAGTTAAAGTTGACCCTCTGGAGAGAAAGCCTTGA

Upstream 100 bases:

>100_bases
TGCAAAATTGCTTGACTCCGCTTTGGATAACTTGAAGGCCTGCGTAATTGGTAAACTTTCCGGGGTATAGAGATTTATCA
AGACACATGGCTAAATCAAC

Downstream 100 bases:

>100_bases
TTCGACGATCTTCTTTTATACGGTATCTTCGTGATCCATCGGATGGTTCCGAAGATGGTATTAATGGTTTTTTCGACGCA
GATACAGATTCGGTGAATGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 145; Mature: 145

Protein sequence:

>145_residues
MVKSVADRFFLGLDFGSTRIGVARNCGSLAVPVGVLPRASCAEILGYISRYSIDEVVIGLPLTLAGKEKQSARLAKEFSR
FLVSSGVQVRFFDERFTTVIATQKFYSLGKGVKQIRKCVDAAAATVMLQLFLDMEVKVDPLERKP

Sequences:

>Translated_145_residues
MVKSVADRFFLGLDFGSTRIGVARNCGSLAVPVGVLPRASCAEILGYISRYSIDEVVIGLPLTLAGKEKQSARLAKEFSR
FLVSSGVQVRFFDERFTTVIATQKFYSLGKGVKQIRKCVDAAAATVMLQLFLDMEVKVDPLERKP
>Mature_145_residues
MVKSVADRFFLGLDFGSTRIGVARNCGSLAVPVGVLPRASCAEILGYISRYSIDEVVIGLPLTLAGKEKQSARLAKEFSR
FLVSSGVQVRFFDERFTTVIATQKFYSLGKGVKQIRKCVDAAAATVMLQLFLDMEVKVDPLERKP

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_TROW8 (Q83HU9)

Other databases:

- EMBL:   BX251411
- RefSeq:   NP_789327.1
- ProteinModelPortal:   Q83HU9
- SMR:   Q83HU9
- STRING:   Q83HU9
- GeneID:   1064680
- GenomeReviews:   BX072543_GR
- KEGG:   tws:TW394
- eggNOG:   COG0816
- HOGENOM:   HBG607919
- OMA:   SVEAREM
- PhylomeDB:   Q83HU9
- ProtClustDB:   CLSK229706
- BioCyc:   TWHI218496:TW0372-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 15923; Mature: 15923

Theoretical pI: Translated: 10.08; Mature: 10.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKSVADRFFLGLDFGSTRIGVARNCGSLAVPVGVLPRASCAEILGYISRYSIDEVVIGL
CCCHHHHHHEEECCCCCCCCCHHCCCCCEECCCCCCCCHHHHHHHHHHHHCCHHHHHCCC
PLTLAGKEKQSARLAKEFSRFLVSSGVQVRFFDERFTTVIATQKFYSLGKGVKQIRKCVD
CEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAAATVMLQLFLDMEVKVDPLERKP
HHHHHHHHHHHHCCCCEECCCCCCC
>Mature Secondary Structure
MVKSVADRFFLGLDFGSTRIGVARNCGSLAVPVGVLPRASCAEILGYISRYSIDEVVIGL
CCCHHHHHHEEECCCCCCCCCHHCCCCCEECCCCCCCCHHHHHHHHHHHHCCHHHHHCCC
PLTLAGKEKQSARLAKEFSRFLVSSGVQVRFFDERFTTVIATQKFYSLGKGVKQIRKCVD
CEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAAATVMLQLFLDMEVKVDPLERKP
HHHHHHHHHHHHCCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12606174