| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
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The map label for this gene is 28572480
Identifier: 28572480
GI number: 28572480
Start: 356911
End: 357549
Strand: Reverse
Name: 28572480
Synonym: TW325
Alternate gene names: NA
Gene position: 357549-356911 (Counterclockwise)
Preceding gene: 28572482
Following gene: 28572472
Centisome position: 38.61
GC content: 51.64
Gene sequence:
>639_bases GTGATGCGGTCGATCAGGTACAAGTCACTCGCGTGGCGCCTTCCGCGCAGAGAGCTTCGTAAAAAGGAAGCTCTTCGAAA GCGCCGGGGTTGGCCTGTCAGGGTCGCGGTTGCCACATTTACGATGACCCTTTTGTCTGGCACCCCAAGTGGAGCGTACG CTTTTGATGATGTTTATCGCTCCGCCTGGCAAGGTTTTGAAAACCTGCAGGACCTGAAAAAAGAGGGTCAAACACTTGCT CTCGGGGGTTATTTCGTCTCACCGCATGCTCAGGACTCCAGGGCGTACACCTCAAGGCCACTTGGTTCTTTTAGCGTACT TTACAAGCCCGTCGCGACCAGCGAAATACAATCATGGGCCCTTGAAAGGGTTTATGCCTCTGGATGGGACTATAGGCAGT TTACATGCCTTGTTCTACTGTGGAACAAGGAATCTGGCTGGAACCCATACGCAATGAACAGATATTCTGGGGCGTATGGG ATACCCCAAGCCCTCCCAGGTAACAAAATGAAAGTTGCTGGAGATGATTGGCGAACAAACCCAAAGACCCAAGTATCATG GGGTTTGAGGTACATATCTGCAAGGTTTGGCAACCCGTGTGGGGCATGGGAACATTCTGTGCGAAAGGGTTGGTACTAA
Upstream 100 bases:
>100_bases GTTTTGATAAGAATAAAGTCGGTGTTTTGGGAAGTATCTCAGGGGGTTCAGACTTAGAATCAGTCGCAAAGTTAAATGCA AGAAGAGCTGTATAATCTTT
Downstream 100 bases:
>100_bases TCTCACCGGGAGTACAGAAGTGCTGTGCGCGAGATTTGGATTTATTCGTAATCCTAAGTAATAAACACAATTTTTAAGAC AGTCGGTCGATGCGGTGCTA
Product: secreted protein
Products: NA
Alternate protein names: G5 Domain Protein; G5 Domain-Containing Protein; TraG-Related Protein; Membrane-Bound Transglycosylase; Transglycosylase; Phage Tail Tape Measure Protein; Immunogenic Secreted Protein; Transglycosylase Domain Protein; Peptidase S1 And S6 Chymotrypsin/Hap; TraG-Like Protein; Phage Tail Tape Mesure Protein
Number of amino acids: Translated: 212; Mature: 212
Protein sequence:
>212_residues MMRSIRYKSLAWRLPRRELRKKEALRKRRGWPVRVAVATFTMTLLSGTPSGAYAFDDVYRSAWQGFENLQDLKKEGQTLA LGGYFVSPHAQDSRAYTSRPLGSFSVLYKPVATSEIQSWALERVYASGWDYRQFTCLVLLWNKESGWNPYAMNRYSGAYG IPQALPGNKMKVAGDDWRTNPKTQVSWGLRYISARFGNPCGAWEHSVRKGWY
Sequences:
>Translated_212_residues MMRSIRYKSLAWRLPRRELRKKEALRKRRGWPVRVAVATFTMTLLSGTPSGAYAFDDVYRSAWQGFENLQDLKKEGQTLA LGGYFVSPHAQDSRAYTSRPLGSFSVLYKPVATSEIQSWALERVYASGWDYRQFTCLVLLWNKESGWNPYAMNRYSGAYG IPQALPGNKMKVAGDDWRTNPKTQVSWGLRYISARFGNPCGAWEHSVRKGWY >Mature_212_residues MMRSIRYKSLAWRLPRRELRKKEALRKRRGWPVRVAVATFTMTLLSGTPSGAYAFDDVYRSAWQGFENLQDLKKEGQTLA LGGYFVSPHAQDSRAYTSRPLGSFSVLYKPVATSEIQSWALERVYASGWDYRQFTCLVLLWNKESGWNPYAMNRYSGAYG IPQALPGNKMKVAGDDWRTNPKTQVSWGLRYISARFGNPCGAWEHSVRKGWY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24382; Mature: 24382
Theoretical pI: Translated: 10.54; Mature: 10.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMRSIRYKSLAWRLPRRELRKKEALRKRRGWPVRVAVATFTMTLLSGTPSGAYAFDDVYR CCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHCCCCCCCHHHHHHHH SAWQGFENLQDLKKEGQTLALGGYFVSPHAQDSRAYTSRPLGSFSVLYKPVATSEIQSWA HHHHHHHHHHHHHHCCCEEEECCEEECCCCCCCCHHHCCCCCCHHHHCCCHHHHHHHHHH LERVYASGWDYRQFTCLVLLWNKESGWNPYAMNRYSGAYGIPQALPGNKMKVAGDDWRTN HHHHHHCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCC PKTQVSWGLRYISARFGNPCGAWEHSVRKGWY CCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCC >Mature Secondary Structure MMRSIRYKSLAWRLPRRELRKKEALRKRRGWPVRVAVATFTMTLLSGTPSGAYAFDDVYR CCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHCCCCCCCHHHHHHHH SAWQGFENLQDLKKEGQTLALGGYFVSPHAQDSRAYTSRPLGSFSVLYKPVATSEIQSWA HHHHHHHHHHHHHHCCCEEEECCEEECCCCCCCCHHHCCCCCCHHHHCCCHHHHHHHHHH LERVYASGWDYRQFTCLVLLWNKESGWNPYAMNRYSGAYGIPQALPGNKMKVAGDDWRTN HHHHHHCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCC PKTQVSWGLRYISARFGNPCGAWEHSVRKGWY CCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA