| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
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The map label for this gene is 28572479
Identifier: 28572479
GI number: 28572479
Start: 356139
End: 356681
Strand: Direct
Name: 28572479
Synonym: TW324
Alternate gene names: NA
Gene position: 356139-356681 (Clockwise)
Preceding gene: 28572478
Following gene: 28572481
Centisome position: 38.46
GC content: 46.04
Gene sequence:
>543_bases GTGAGAAAATTCCTGTTTCGTCGGACCTCTCCCTTTGCGCTCGGATACGACAAACGGCAAGTTGACACGTTTTTTTCGGC TGCTAAGGTTGCTTATGAAAACTCTGACCCGAAACTCCGGTCTTCACTTATTAGAAATATTACTTTCAAGCTGAGAAGGC GCGGTTATTCTCCAAAGCAGGTTGATGCAGCTTTAGATCGTCTTGAACGGGCGTGTATTTTTAAAGAGCGACAGGCCTAT GTTGCACTACATGGATCCCAGGCATGGAAAGAGCATGTTGTATCCAGAATTCAACAGATTGCAGACCGTCTTCAAAAACC GCCGAGAAAACGTTTTATCCGCGAAAATTGGGGGTACGAGCCTAATTCTGTTGATCGAGTGCTTGATCGAGTGCTTGGCT ATTTACGTCGTACCGGCACCCTAAGTGAGGATGAAGTCCGCTCTGCGGTCTTTCGACCCTCGTACAGGGGGTACAAAACA GGTCATGTTGATGCGTATCTCGATGAAGTTAGATTGATTATCATCATGCTTGAATGGAGATAA
Upstream 100 bases:
>100_bases TTTTGGCCTTACTCCCAGTGATCACGCCCCACTGGTGTCGGTTATTGATCCCCCTAGGCGGACATTTCGCAGAGACGACT GAACCTACCTGATTTTTGCA
Downstream 100 bases:
>100_bases GCTGCGCCTAATCTTTATGGGCAGTGAATGAATATCCAGACCAGATGATCATGCGTCATATTTGCGCTTCGGATGACTAA TTACGCCCGTTTTATTAGAG
Product: hypothetical protein
Products: NA
Alternate protein names: DivIVA Domain Protein; Metal-Dependent Hydrolase Of Beta-Lactamase Superfamily II
Number of amino acids: Translated: 180; Mature: 180
Protein sequence:
>180_residues MRKFLFRRTSPFALGYDKRQVDTFFSAAKVAYENSDPKLRSSLIRNITFKLRRRGYSPKQVDAALDRLERACIFKERQAY VALHGSQAWKEHVVSRIQQIADRLQKPPRKRFIRENWGYEPNSVDRVLDRVLGYLRRTGTLSEDEVRSAVFRPSYRGYKT GHVDAYLDEVRLIIIMLEWR
Sequences:
>Translated_180_residues MRKFLFRRTSPFALGYDKRQVDTFFSAAKVAYENSDPKLRSSLIRNITFKLRRRGYSPKQVDAALDRLERACIFKERQAY VALHGSQAWKEHVVSRIQQIADRLQKPPRKRFIRENWGYEPNSVDRVLDRVLGYLRRTGTLSEDEVRSAVFRPSYRGYKT GHVDAYLDEVRLIIIMLEWR >Mature_180_residues MRKFLFRRTSPFALGYDKRQVDTFFSAAKVAYENSDPKLRSSLIRNITFKLRRRGYSPKQVDAALDRLERACIFKERQAY VALHGSQAWKEHVVSRIQQIADRLQKPPRKRFIRENWGYEPNSVDRVLDRVLGYLRRTGTLSEDEVRSAVFRPSYRGYKT GHVDAYLDEVRLIIIMLEWR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21358; Mature: 21358
Theoretical pI: Translated: 10.85; Mature: 10.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRKFLFRRTSPFALGYDKRQVDTFFSAAKVAYENSDPKLRSSLIRNITFKLRRRGYSPKQ CCCCHHCCCCCCEECCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHH VDAALDRLERACIFKERQAYVALHGSQAWKEHVVSRIQQIADRLQKPPRKRFIRENWGYE HHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC PNSVDRVLDRVLGYLRRTGTLSEDEVRSAVFRPSYRGYKTGHVDAYLDEVRLIIIMLEWR CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHEEEEEEECC >Mature Secondary Structure MRKFLFRRTSPFALGYDKRQVDTFFSAAKVAYENSDPKLRSSLIRNITFKLRRRGYSPKQ CCCCHHCCCCCCEECCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHH VDAALDRLERACIFKERQAYVALHGSQAWKEHVVSRIQQIADRLQKPPRKRFIRENWGYE HHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC PNSVDRVLDRVLGYLRRTGTLSEDEVRSAVFRPSYRGYKTGHVDAYLDEVRLIIIMLEWR CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA