| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
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The map label for this gene is fgs [H]
Identifier: 28572444
GI number: 28572444
Start: 327361
End: 328722
Strand: Direct
Name: fgs [H]
Synonym: TW288
Alternate gene names: 28572444
Gene position: 327361-328722 (Clockwise)
Preceding gene: 28572443
Following gene: 28572445
Centisome position: 35.35
GC content: 45.01
Gene sequence:
>1362_bases ATGTCAAGAGCCGGCGAGGCCCTCCCGCAGCCGCGGCTTGATGGCACCAAACTTGCCCTATCGTATCTGTCAAATCCTCA AGAATGTGCTCCGGTAATTCACATCACCGGAACAAATGGGAAAACAACTGTAAGCAGGATGATAGCCTGCATCCTAACAT CTCTCGGGCTGCGTGTCGGTTTATTTACTAGCCCTCACATTACCGCTCTCGAGGAGAGAATTCAGATTGACATGAATCCC GTCCAGGGGCACATCTTAGAGAAACACTGGTTCGATATTCAGTTTCAGTTGCGGCTCGCGGATGCTCATCTTGAGAAAAA AAACTGCCCACCGCTGACATTTTTTGAGTGTATGACGGTTCTTGCATTTTCATGCTTTGCAGATACACCTGTGGATGTCA TGGTGCTTGAGGTTGGTATGGGTGGTGCTTGGGATGCAACCAATGTTGTCGATGCCAGGGTGTGTGTTTTTACGCCAATT GATTTTGATCATACAGGTCGTTTGGGAAGCAGGTTAGAAGAGATTGCACACACAAAAGCTGGGATAATCAAGCCAGGATC TTTTGTTGTAGCTGCAGAACAACATCAAGTTGTGCAAGAGTGCCTTGAGGATTATTTTGCATCCATAAATATCGGATGCC AGAGCTATGACACAGAATTACCTGACAAAATAAGGTTCTTTGGGCAAGATTTTGACTGTGATTACAAACCCGTTGCGGGA GGGCAAATACTCGATTTGCGTGGTCTATACGGTGAGTGCAACGAGGTTTTTCTTCCACTTTTTGGTGGATATCAGGCTAA AAACGCTGCCCTGTCCTTAGCTGCCGTGGAAAGCTTTTTTGGTAGGGTGGAACATGATATAGTCCTCGAGGCCTTTTCAA ATATAACGAGCCCAGGGCGGCTTCAGATTATTTCTAAAAATCCAGTTGTTTTACTTGATGCAGCACATAATCCACATGCG GCAAAACATCTCGCAATTGCTCTGGATGAATTTTTTTCCTTTGGGAAAATTGTGTTTATTTTAGCGTTTTTATCCGATAA AGACATTGAAGGCATAATTCGTAATCTAATGTCTTTTTTACACGGCTCGCTGCGTGTAACGAGTGACTCCGTAGGTTACA GTGAATCGGAAAGCACCCGGTTCAGTAACCCTCGTGTAACATTTGTCATAACACAATCAACACACCCGCGAGCGGTTGCC GCTGATGTAGCGTTTAGCATTGCTAAAAGAGTTGTAGCTAACGAGGGACTTATAGTATGTGAAAGTGCGAATGATGCGTT TCAGTACAGTACCAGGCTTAATCCGGATGCCATTGTTGTCTCCGGCTCTATCAGCATTCTTAGTAGTTTTATTCCGCGAT AA
Upstream 100 bases:
>100_bases ACATCTATTCGGCTCGATAGCCTATTCAGTTTGTCCGCCTGAGTTTCCCTTACTGGATGATTGGAGCCTGTAGGCCGTGT CAGAGTTTTACAGGCAGATT
Downstream 100 bases:
>100_bases ATAAATGAATTATCTCAGGACAAAGGTTGCAAGAGTTGTTCTCTCTTTTGAGCTCGTTGCATTTATTCTCGCAGGTGTTT TTTTGTTTACTATGCCATTT
Product: folylpolyglutamate synthase
Products: NA
Alternate protein names: Folylpoly-gamma-glutamate synthetase; FPGS; Tetrahydrofolate synthase; Tetrahydrofolylpolyglutamate synthase [H]
Number of amino acids: Translated: 453; Mature: 452
Protein sequence:
>453_residues MSRAGEALPQPRLDGTKLALSYLSNPQECAPVIHITGTNGKTTVSRMIACILTSLGLRVGLFTSPHITALEERIQIDMNP VQGHILEKHWFDIQFQLRLADAHLEKKNCPPLTFFECMTVLAFSCFADTPVDVMVLEVGMGGAWDATNVVDARVCVFTPI DFDHTGRLGSRLEEIAHTKAGIIKPGSFVVAAEQHQVVQECLEDYFASINIGCQSYDTELPDKIRFFGQDFDCDYKPVAG GQILDLRGLYGECNEVFLPLFGGYQAKNAALSLAAVESFFGRVEHDIVLEAFSNITSPGRLQIISKNPVVLLDAAHNPHA AKHLAIALDEFFSFGKIVFILAFLSDKDIEGIIRNLMSFLHGSLRVTSDSVGYSESESTRFSNPRVTFVITQSTHPRAVA ADVAFSIAKRVVANEGLIVCESANDAFQYSTRLNPDAIVVSGSISILSSFIPR
Sequences:
>Translated_453_residues MSRAGEALPQPRLDGTKLALSYLSNPQECAPVIHITGTNGKTTVSRMIACILTSLGLRVGLFTSPHITALEERIQIDMNP VQGHILEKHWFDIQFQLRLADAHLEKKNCPPLTFFECMTVLAFSCFADTPVDVMVLEVGMGGAWDATNVVDARVCVFTPI DFDHTGRLGSRLEEIAHTKAGIIKPGSFVVAAEQHQVVQECLEDYFASINIGCQSYDTELPDKIRFFGQDFDCDYKPVAG GQILDLRGLYGECNEVFLPLFGGYQAKNAALSLAAVESFFGRVEHDIVLEAFSNITSPGRLQIISKNPVVLLDAAHNPHA AKHLAIALDEFFSFGKIVFILAFLSDKDIEGIIRNLMSFLHGSLRVTSDSVGYSESESTRFSNPRVTFVITQSTHPRAVA ADVAFSIAKRVVANEGLIVCESANDAFQYSTRLNPDAIVVSGSISILSSFIPR >Mature_452_residues SRAGEALPQPRLDGTKLALSYLSNPQECAPVIHITGTNGKTTVSRMIACILTSLGLRVGLFTSPHITALEERIQIDMNPV QGHILEKHWFDIQFQLRLADAHLEKKNCPPLTFFECMTVLAFSCFADTPVDVMVLEVGMGGAWDATNVVDARVCVFTPID FDHTGRLGSRLEEIAHTKAGIIKPGSFVVAAEQHQVVQECLEDYFASINIGCQSYDTELPDKIRFFGQDFDCDYKPVAGG QILDLRGLYGECNEVFLPLFGGYQAKNAALSLAAVESFFGRVEHDIVLEAFSNITSPGRLQIISKNPVVLLDAAHNPHAA KHLAIALDEFFSFGKIVFILAFLSDKDIEGIIRNLMSFLHGSLRVTSDSVGYSESESTRFSNPRVTFVITQSTHPRAVAA DVAFSIAKRVVANEGLIVCESANDAFQYSTRLNPDAIVVSGSISILSSFIPR
Specific function: Conversion of folates to polyglutamate derivatives. It preferes 5,10-methylenetetrahydrofolate, rather than 10- formyltetrahydrofolate as folate substrate [H]
COG id: COG0285
COG function: function code H; Folylpolyglutamate synthase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the folylpolyglutamate synthase family [H]
Homologues:
Organism=Homo sapiens, GI66932984, Length=364, Percent_Identity=28.2967032967033, Blast_Score=121, Evalue=1e-27, Organism=Homo sapiens, GI66932990, Length=364, Percent_Identity=28.2967032967033, Blast_Score=121, Evalue=1e-27, Organism=Escherichia coli, GI1788654, Length=346, Percent_Identity=31.7919075144509, Blast_Score=140, Evalue=2e-34, Organism=Caenorhabditis elegans, GI17553148, Length=409, Percent_Identity=27.3838630806846, Blast_Score=122, Evalue=6e-28, Organism=Caenorhabditis elegans, GI71984923, Length=409, Percent_Identity=27.3838630806846, Blast_Score=121, Evalue=7e-28, Organism=Caenorhabditis elegans, GI17553150, Length=409, Percent_Identity=27.3838630806846, Blast_Score=121, Evalue=8e-28, Organism=Saccharomyces cerevisiae, GI6323760, Length=358, Percent_Identity=28.7709497206704, Blast_Score=124, Evalue=2e-29, Organism=Saccharomyces cerevisiae, GI6324815, Length=358, Percent_Identity=26.2569832402235, Blast_Score=101, Evalue=2e-22, Organism=Drosophila melanogaster, GI24641571, Length=175, Percent_Identity=41.7142857142857, Blast_Score=112, Evalue=4e-25, Organism=Drosophila melanogaster, GI24581568, Length=157, Percent_Identity=33.7579617834395, Blast_Score=93, Evalue=4e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018109 - InterPro: IPR001645 - InterPro: IPR004101 - InterPro: IPR013221 [H]
Pfam domain/function: PF02875 Mur_ligase_C; PF08245 Mur_ligase_M [H]
EC number: =6.3.2.17 [H]
Molecular weight: Translated: 49590; Mature: 49459
Theoretical pI: Translated: 5.39; Mature: 5.39
Prosite motif: PS01011 FOLYLPOLYGLU_SYNT_1 ; PS01012 FOLYLPOLYGLU_SYNT_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRAGEALPQPRLDGTKLALSYLSNPQECAPVIHITGTNGKTTVSRMIACILTSLGLRVG CCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCEEE LFTSPHITALEERIQIDMNPVQGHILEKHWFDIQFQLRLADAHLEKKNCPPLTFFECMTV EECCCCHHHHHHHHEEECCCCCCCEECCEEEEEEEEEEEECHHHCCCCCCCCHHHHHHHH LAFSCFADTPVDVMVLEVGMGGAWDATNVVDARVCVFTPIDFDHTGRLGSRLEEIAHTKA HHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHC GIIKPGSFVVAAEQHQVVQECLEDYFASINIGCQSYDTELPDKIRFFGQDFDCDYKPVAG CCCCCCCEEEEEHHHHHHHHHHHHHHHEEECCCCCCCCCCCHHHHHCCCCCCCCCCCCCC GQILDLRGLYGECNEVFLPLFGGYQAKNAALSLAAVESFFGRVEHDIVLEAFSNITSPGR CEEEEECCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE LQIISKNPVVLLDAAHNPHAAKHLAIALDEFFSFGKIVFILAFLSDKDIEGIIRNLMSFL EEEEECCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH HGSLRVTSDSVGYSESESTRFSNPRVTFVITQSTHPRAVAADVAFSIAKRVVANEGLIVC CCCEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEE ESANDAFQYSTRLNPDAIVVSGSISILSSFIPR ECCCCCEEEECCCCCCEEEEECHHHHHHHHCCC >Mature Secondary Structure SRAGEALPQPRLDGTKLALSYLSNPQECAPVIHITGTNGKTTVSRMIACILTSLGLRVG CCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCEEE LFTSPHITALEERIQIDMNPVQGHILEKHWFDIQFQLRLADAHLEKKNCPPLTFFECMTV EECCCCHHHHHHHHEEECCCCCCCEECCEEEEEEEEEEEECHHHCCCCCCCCHHHHHHHH LAFSCFADTPVDVMVLEVGMGGAWDATNVVDARVCVFTPIDFDHTGRLGSRLEEIAHTKA HHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHC GIIKPGSFVVAAEQHQVVQECLEDYFASINIGCQSYDTELPDKIRFFGQDFDCDYKPVAG CCCCCCCEEEEEHHHHHHHHHHHHHHHEEECCCCCCCCCCCHHHHHCCCCCCCCCCCCCC GQILDLRGLYGECNEVFLPLFGGYQAKNAALSLAAVESFFGRVEHDIVLEAFSNITSPGR CEEEEECCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE LQIISKNPVVLLDAAHNPHAAKHLAIALDEFFSFGKIVFILAFLSDKDIEGIIRNLMSFL EEEEECCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH HGSLRVTSDSVGYSESESTRFSNPRVTFVITQSTHPRAVAADVAFSIAKRVVANEGLIVC CCCEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEE ESANDAFQYSTRLNPDAIVVSGSISILSSFIPR ECCCCCEEEECCCCCCEEEEECHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8419299; 9384377; 2553669 [H]