| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
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The map label for this gene is braE [H]
Identifier: 28572362
GI number: 28572362
Start: 240175
End: 241269
Strand: Direct
Name: braE [H]
Synonym: TW202
Alternate gene names: 28572362
Gene position: 240175-241269 (Clockwise)
Preceding gene: 28572361
Following gene: 28572363
Centisome position: 25.94
GC content: 46.39
Gene sequence:
>1095_bases GTGATGGGCTTTCTATCGTCTGTTATGCGGTGGTGGAAGGGTATGTCTCGCCCCCAGCAGTGGTTTTTTCTTCTTCCGTT TGTGGTCCTTGTTTATCTTTTGCCAATTATTAATCCTCCGGTTATCACAACCGAACCGGGCAATAATTTTCCAATCTCAC TGTTTACAATGGCAATTTATGCCCTCGCCGCGGTCGGTCTTAATGTAGTTGTTGGTTATGCAGGACTTCTTGATTTGGGT TATATTGCATTTTTTGCGGTTGGTGCTTATGTATCTGCTGTATTTACGAGTCCGGATTCTCCGTATGTCAAAATTCCTTA TCTTTGGACCATTCCTGTTGCGATTTTTACTGCCATGGTTTTTGGCGCAGCCCTGGGTGTACCTACCCTCCGTCTTCGGG GAGACTATCTGGCGATTGTTACTCTTGGGTTTGGAGAGATAGTCAGAATTATGGCGACTGTTATCCCTGCCCTCCGTGGT AACCTCGGGTTTTCCAATGTTGGCCACCCGCCGGGCGACTATCCTTCTGGCCAGCCGATTTTCACGCCTGATAATGGAGT AGCTTGGTATTGGGTCGCTATTACAGTTGTTATATTCGTTCTTGTAATCGTTGGGAATCTCGAGAGGAGTATTGTCGGCA GAAACTGGTTTGCTATCTGCCAGGATGAAGATGCTGCAGAGGTTATGGGTGTGAATACCTTTTCCTTCAAGGTATGGGCT TTTGCAATTGGTGCTGCAATTGGTGGCCTCTCCGGTTCCCTGCAGGCTGCACAGACAGGGTTTGTAAATAATCAGCGTTT TGATGTTGCGACCTCCGTTTTATTCCTTGTTGCAGTCGTACTTGGCGGTTCTGGTAACAAATTTGGTGCTGCAATTGGTG GTGCACTTGTGGCGTATATTCCACTGCGTTTTACGGAGATTGCACAATACAAGTATTTGATCTTCGGTGTATGTCTTATA CTTCTGATGCTTTTTAGACATGAAGGCCTGTTTCCTATGAAGGCAAATCTTTTTTCAAGACAGGTTTTGCTGCGGAAATT GTCATTGCGCCATTCACCCGATAAACGTGCGTCATCTTCGCCCTCGGGGTCTTGA
Upstream 100 bases:
>100_bases AGTGGGGTGATGTTTCTGTCTTTGTTCTTCTGTTACTAGTTTTACTTTTCAGGCCATCTGGTATCCTCGGCAGATCTGGC CTTTCGGCTAAAAGCAGGAT
Downstream 100 bases:
>100_bases TATGCAAGACGCGCTGTTACAGTCTGAGCATCTTCTTGATGTGCGTGATCTCGTTGTTCGCTTTGGGGGTATTGTCGCGC TCGACGGCGTCTCGTTCAGT
Product: ABC transporter branched chain amino acid transport permease
Products: ADP; phosphate; L-valine [Cytoplasm]; ADP; L-iso-leucine [Cytoplasm]; L-leucine [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 364; Mature: 364
Protein sequence:
>364_residues MMGFLSSVMRWWKGMSRPQQWFFLLPFVVLVYLLPIINPPVITTEPGNNFPISLFTMAIYALAAVGLNVVVGYAGLLDLG YIAFFAVGAYVSAVFTSPDSPYVKIPYLWTIPVAIFTAMVFGAALGVPTLRLRGDYLAIVTLGFGEIVRIMATVIPALRG NLGFSNVGHPPGDYPSGQPIFTPDNGVAWYWVAITVVIFVLVIVGNLERSIVGRNWFAICQDEDAAEVMGVNTFSFKVWA FAIGAAIGGLSGSLQAAQTGFVNNQRFDVATSVLFLVAVVLGGSGNKFGAAIGGALVAYIPLRFTEIAQYKYLIFGVCLI LLMLFRHEGLFPMKANLFSRQVLLRKLSLRHSPDKRASSSPSGS
Sequences:
>Translated_364_residues MMGFLSSVMRWWKGMSRPQQWFFLLPFVVLVYLLPIINPPVITTEPGNNFPISLFTMAIYALAAVGLNVVVGYAGLLDLG YIAFFAVGAYVSAVFTSPDSPYVKIPYLWTIPVAIFTAMVFGAALGVPTLRLRGDYLAIVTLGFGEIVRIMATVIPALRG NLGFSNVGHPPGDYPSGQPIFTPDNGVAWYWVAITVVIFVLVIVGNLERSIVGRNWFAICQDEDAAEVMGVNTFSFKVWA FAIGAAIGGLSGSLQAAQTGFVNNQRFDVATSVLFLVAVVLGGSGNKFGAAIGGALVAYIPLRFTEIAQYKYLIFGVCLI LLMLFRHEGLFPMKANLFSRQVLLRKLSLRHSPDKRASSSPSGS >Mature_364_residues MMGFLSSVMRWWKGMSRPQQWFFLLPFVVLVYLLPIINPPVITTEPGNNFPISLFTMAIYALAAVGLNVVVGYAGLLDLG YIAFFAVGAYVSAVFTSPDSPYVKIPYLWTIPVAIFTAMVFGAALGVPTLRLRGDYLAIVTLGFGEIVRIMATVIPALRG NLGFSNVGHPPGDYPSGQPIFTPDNGVAWYWVAITVVIFVLVIVGNLERSIVGRNWFAICQDEDAAEVMGVNTFSFKVWA FAIGAAIGGLSGSLQAAQTGFVNNQRFDVATSVLFLVAVVLGGSGNKFGAAIGGALVAYIPLRFTEIAQYKYLIFGVCLI LLMLFRHEGLFPMKANLFSRQVLLRKLSLRHSPDKRASSSPSGS
Specific function: Component of the high affinity leucine, isoleucine, valine, transport system (LIV-I), which is operative without Na(+) and is specific for alanine and threonine, in addition to branched-chain amino acids [H]
COG id: COG4177
COG function: function code E; ABC-type branched-chain amino acid transport system, permease component
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the binding-protein-dependent transport system permease family. LivHM subfamily [H]
Homologues:
Organism=Escherichia coli, GI1789865, Length=300, Percent_Identity=37.6666666666667, Blast_Score=145, Evalue=5e-36,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001851 - InterPro: IPR021807 [H]
Pfam domain/function: PF02653 BPD_transp_2; PF11862 DUF3382 [H]
EC number: NA
Molecular weight: Translated: 39441; Mature: 39441
Theoretical pI: Translated: 9.68; Mature: 9.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMGFLSSVMRWWKGMSRPQQWFFLLPFVVLVYLLPIINPPVITTEPGNNFPISLFTMAIY CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHH ALAAVGLNVVVGYAGLLDLGYIAFFAVGAYVSAVFTSPDSPYVKIPYLWTIPVAIFTAMV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHH FGAALGVPTLRLRGDYLAIVTLGFGEIVRIMATVIPALRGNLGFSNVGHPPGDYPSGQPI HHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEE FTPDNGVAWYWVAITVVIFVLVIVGNLERSIVGRNWFAICQDEDAAEVMGVNTFSFKVWA ECCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCEEEEECCCCHHHHHCCCHHHHHHHH FAIGAAIGGLSGSLQAAQTGFVNNQRFDVATSVLFLVAVVLGGSGNKFGAAIGGALVAYI HHHHHHHCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH PLRFTEIAQYKYLIFGVCLILLMLFRHEGLFPMKANLFSRQVLLRKLSLRHSPDKRASSS HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC PSGS CCCC >Mature Secondary Structure MMGFLSSVMRWWKGMSRPQQWFFLLPFVVLVYLLPIINPPVITTEPGNNFPISLFTMAIY CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHH ALAAVGLNVVVGYAGLLDLGYIAFFAVGAYVSAVFTSPDSPYVKIPYLWTIPVAIFTAMV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHH FGAALGVPTLRLRGDYLAIVTLGFGEIVRIMATVIPALRGNLGFSNVGHPPGDYPSGQPI HHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEE FTPDNGVAWYWVAITVVIFVLVIVGNLERSIVGRNWFAICQDEDAAEVMGVNTFSFKVWA ECCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCEEEEECCCCHHHHHCCCHHHHHHHH FAIGAAIGGLSGSLQAAQTGFVNNQRFDVATSVLFLVAVVLGGSGNKFGAAIGGALVAYI HHHHHHHCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH PLRFTEIAQYKYLIFGVCLILLMLFRHEGLFPMKANLFSRQVLLRKLSLRHSPDKRASSS HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC PSGS CCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-valine [Periplasm]; H2O; ATP; L-iso-leucine [Periplasm]; L-leucine [Periplasm] [C]
Specific reaction: ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 2120183; 10984043 [H]