| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
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The map label for this gene is 28572345
Identifier: 28572345
GI number: 28572345
Start: 224723
End: 225307
Strand: Direct
Name: 28572345
Synonym: TW184
Alternate gene names: NA
Gene position: 224723-225307 (Clockwise)
Preceding gene: 28572344
Following gene: 28572346
Centisome position: 24.27
GC content: 43.59
Gene sequence:
>585_bases ATGACAAAACCCGTGGCATACTCTATCTATGCACTTATCGTTATCCTGACTGGTATTGGTCTGGGTATTATTGGACTTCC CTTTGCCACCCTTGCGTTTATCGCGATTTTCGTCTCGACTCCTGCTTTGTTTAGAGCTGATATCAGAGAGTTACGGCTTC CCAATGCAATTACGCTTCCGCTTATCGCAATTGGCATTGTGGCGTTACTTGCGGATCAGATTGTTCACCCCAATTTGGAT ATTGTCTTTTCTGCTCTTATCGCAATTGGCCTATCCTCATTCCTTTTTATTGTGTCTATTTTTGGCGGTATGGGAATGGG GGATGTAAAGTTATCGCTTGCCCTGCTCTTGTGTGCGGCGAATCTGGGCCCTGCCTTCCCTATAATTGCAATCTCTAGTG CCTTCCTTGTGGCATTCTGTTTCTGCATCCTGATATTTGTAGGTCTCTTTAGATTCTTTAAAAATAGTGGGAGAATTAGC TGTTTGCCGTTTGGGCCATTTTTATTGCTTGGATTCTGGACAACTGTTATTGTGTGGGGTATAGACAGATGGACAGATGT GGATATCCTCAGAATTATTTGGTGA
Upstream 100 bases:
>100_bases TTCTTCCGTGAAGGTTTACCAAATCACTTCTTGTGTCACTAACTAAGACGTTTGTTGAAAACCTGTTTTAGTATTCTCCG CGCGGTGTAGTGTAAAGCCC
Downstream 100 bases:
>100_bases CAGTTTCTGCGGCACTGCCTTTGCCCGGATACCTGCTACGACAGCACTGAAAAGCTGACAAATAGGTCTCCTTGGTTACA TTCCTTTTTGTCTTTTATTT
Product: peptidase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 194; Mature: 193
Protein sequence:
>194_residues MTKPVAYSIYALIVILTGIGLGIIGLPFATLAFIAIFVSTPALFRADIRELRLPNAITLPLIAIGIVALLADQIVHPNLD IVFSALIAIGLSSFLFIVSIFGGMGMGDVKLSLALLLCAANLGPAFPIIAISSAFLVAFCFCILIFVGLFRFFKNSGRIS CLPFGPFLLLGFWTTVIVWGIDRWTDVDILRIIW
Sequences:
>Translated_194_residues MTKPVAYSIYALIVILTGIGLGIIGLPFATLAFIAIFVSTPALFRADIRELRLPNAITLPLIAIGIVALLADQIVHPNLD IVFSALIAIGLSSFLFIVSIFGGMGMGDVKLSLALLLCAANLGPAFPIIAISSAFLVAFCFCILIFVGLFRFFKNSGRIS CLPFGPFLLLGFWTTVIVWGIDRWTDVDILRIIW >Mature_193_residues TKPVAYSIYALIVILTGIGLGIIGLPFATLAFIAIFVSTPALFRADIRELRLPNAITLPLIAIGIVALLADQIVHPNLDI VFSALIAIGLSSFLFIVSIFGGMGMGDVKLSLALLLCAANLGPAFPIIAISSAFLVAFCFCILIFVGLFRFFKNSGRISC LPFGPFLLLGFWTTVIVWGIDRWTDVDILRIIW
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20977; Mature: 20846
Theoretical pI: Translated: 8.33; Mature: 8.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKPVAYSIYALIVILTGIGLGIIGLPFATLAFIAIFVSTPALFRADIRELRLPNAITLP CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHH LIAIGIVALLADQIVHPNLDIVFSALIAIGLSSFLFIVSIFGGMGMGDVKLSLALLLCAA HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH NLGPAFPIIAISSAFLVAFCFCILIFVGLFRFFKNSGRISCLPFGPFLLLGFWTTVIVWG CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHC IDRWTDVDILRIIW CCCCCCHHHHHHCC >Mature Secondary Structure TKPVAYSIYALIVILTGIGLGIIGLPFATLAFIAIFVSTPALFRADIRELRLPNAITLP CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHH LIAIGIVALLADQIVHPNLDIVFSALIAIGLSSFLFIVSIFGGMGMGDVKLSLALLLCAA HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH NLGPAFPIIAISSAFLVAFCFCILIFVGLFRFFKNSGRISCLPFGPFLLLGFWTTVIVWG CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHC IDRWTDVDILRIIW CCCCCCHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA