| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
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The map label for this gene is folE [H]
Identifier: 28572336
GI number: 28572336
Start: 216002
End: 216547
Strand: Direct
Name: folE [H]
Synonym: TW174
Alternate gene names: 28572336
Gene position: 216002-216547 (Clockwise)
Preceding gene: 28572335
Following gene: 28572337
Centisome position: 23.33
GC content: 49.82
Gene sequence:
>546_bases GTGACGAAGTTGTGTAGATTTGAGAGTGGTTCGGCGCAATCCGCGGTGGCGAATTTGCTGTCCGCGCTTGGGCAGGACGT AGGCAGGCTAAAGGAGACTCCTTCTATTGCATCCTCTGGCCTTGAGTCTCTTATCTCTGGTAGTGAAACGAATCCAGCAG ATTGCCTTGTTGACCTAATTCCCAACACACAAAAGGGGATTGTGATTTTGCGCGATATACCATTCAGATCGATCTGTGAA CATCACTTATTACCATTTGTGGGCACGGCGAATCTGCTGTATGAACCAGGGAAGTTTCTTGCAGGCCTAGGTAATCTCAC TTCCCTGGTGCGATGTGCTGCGCGGCGCCTTAGCATTCAGGAGCGCGTAACAGATCAAATAGCTGATGCGATTTATACGG GCCTTTGTGCGCGCCGCGTTCTTGTGTCACTTGCTGCCCGGCATACCTGCATTTTGGATGAAGCTGGAAATACAGAAGTT ACGACCTTCGCGCATCGGGGTATAGGAGATGCCGATATCATCTCTTTTATGACAATAATCCGGTAG
Upstream 100 bases:
>100_bases ACCGCAAAATCGCCAAAGAGAACTTCCAACAGACGTAGGTTGCCTTCAGCAAGGCGCCCGAGGAAGGATTCGGAGACTCA GGAATAAGTTCAGCCATTCG
Downstream 100 bases:
>100_bases CGTGTACCTGCTATTTCGCTTGGGTTAACGTGTATTGTGATGAACATGAGCTATACTCCCGACCCATTTCCACCTCCTAA TGTAATGGGCATTCTGAATA
Product: GTP cyclohydrolase I
Products: NA
Alternate protein names: GTP cyclohydrolase I; GTP-CH-I [H]
Number of amino acids: Translated: 181; Mature: 180
Protein sequence:
>181_residues MTKLCRFESGSAQSAVANLLSALGQDVGRLKETPSIASSGLESLISGSETNPADCLVDLIPNTQKGIVILRDIPFRSICE HHLLPFVGTANLLYEPGKFLAGLGNLTSLVRCAARRLSIQERVTDQIADAIYTGLCARRVLVSLAARHTCILDEAGNTEV TTFAHRGIGDADIISFMTIIR
Sequences:
>Translated_181_residues MTKLCRFESGSAQSAVANLLSALGQDVGRLKETPSIASSGLESLISGSETNPADCLVDLIPNTQKGIVILRDIPFRSICE HHLLPFVGTANLLYEPGKFLAGLGNLTSLVRCAARRLSIQERVTDQIADAIYTGLCARRVLVSLAARHTCILDEAGNTEV TTFAHRGIGDADIISFMTIIR >Mature_180_residues TKLCRFESGSAQSAVANLLSALGQDVGRLKETPSIASSGLESLISGSETNPADCLVDLIPNTQKGIVILRDIPFRSICEH HLLPFVGTANLLYEPGKFLAGLGNLTSLVRCAARRLSIQERVTDQIADAIYTGLCARRVLVSLAARHTCILDEAGNTEVT TFAHRGIGDADIISFMTIIR
Specific function: Tetrahydrofolate biosynthesis; first step. [C]
COG id: COG0302
COG function: function code H; GTP cyclohydrolase I
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GTP cyclohydrolase I family [H]
Homologues:
Organism=Homo sapiens, GI66932968, Length=177, Percent_Identity=35.5932203389831, Blast_Score=94, Evalue=6e-20, Organism=Homo sapiens, GI4503949, Length=177, Percent_Identity=35.5932203389831, Blast_Score=94, Evalue=6e-20, Organism=Homo sapiens, GI66932970, Length=125, Percent_Identity=40, Blast_Score=86, Evalue=2e-17, Organism=Homo sapiens, GI66932972, Length=125, Percent_Identity=40, Blast_Score=86, Evalue=3e-17, Organism=Escherichia coli, GI1788476, Length=127, Percent_Identity=36.2204724409449, Blast_Score=66, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17560486, Length=142, Percent_Identity=32.3943661971831, Blast_Score=87, Evalue=4e-18, Organism=Saccharomyces cerevisiae, GI6321706, Length=159, Percent_Identity=37.1069182389937, Blast_Score=94, Evalue=1e-20, Organism=Drosophila melanogaster, GI24656782, Length=137, Percent_Identity=32.8467153284672, Blast_Score=73, Evalue=9e-14, Organism=Drosophila melanogaster, GI24656796, Length=137, Percent_Identity=32.8467153284672, Blast_Score=73, Evalue=1e-13, Organism=Drosophila melanogaster, GI24656791, Length=137, Percent_Identity=32.8467153284672, Blast_Score=72, Evalue=2e-13,
Paralogues:
None
Copy number: 420 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001474 - InterPro: IPR020602 - InterPro: IPR018234 [H]
Pfam domain/function: PF01227 GTP_cyclohydroI [H]
EC number: =3.5.4.16 [H]
Molecular weight: Translated: 19410; Mature: 19278
Theoretical pI: Translated: 6.90; Mature: 6.90
Prosite motif: PS00859 GTP_CYCLOHYDROL_1_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.3 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 3.3 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKLCRFESGSAQSAVANLLSALGQDVGRLKETPSIASSGLESLISGSETNPADCLVDLI CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHC PNTQKGIVILRDIPFRSICEHHLLPFVGTANLLYEPGKFLAGLGNLTSLVRCAARRLSIQ CCCCCCEEEEECCCHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH ERVTDQIADAIYTGLCARRVLVSLAARHTCILDEAGNTEVTTFAHRGIGDADIISFMTII HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHCCCCHHHHHHHHHHH R C >Mature Secondary Structure TKLCRFESGSAQSAVANLLSALGQDVGRLKETPSIASSGLESLISGSETNPADCLVDLI CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHC PNTQKGIVILRDIPFRSICEHHLLPFVGTANLLYEPGKFLAGLGNLTSLVRCAARRLSIQ CCCCCCEEEEECCCHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH ERVTDQIADAIYTGLCARRVLVSLAARHTCILDEAGNTEVTTFAHRGIGDADIISFMTII HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHCCCCHHHHHHHHHHH R C
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA