| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
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The map label for this gene is stp [H]
Identifier: 28572267
GI number: 28572267
Start: 100065
End: 100817
Strand: Direct
Name: stp [H]
Synonym: TW100
Alternate gene names: 28572267
Gene position: 100065-100817 (Clockwise)
Preceding gene: 28572265
Following gene: 28572269
Centisome position: 10.81
GC content: 45.42
Gene sequence:
>753_bases GTGTCTAATAGATCAACTGGTTCAGATGATTACATCGTCTCTGGCAAGTTCTCTATATCGTGGGCCTCACTTAGCCATGT TGGCCACCACCGAGAGTCTAATGAAGACAGCTACAGTGCAAAGCCCCCGTTATGGGTTGTTGCCGATGGCATGGGTGGTC ATGCTTGTGGTGATATTGCCAGCGGAGTTGTTACATCTTTTCTGTCTGCTATATCTTCAGACTTTGTAAGTCCGCAGGAT ATTACTGGGGCTTTGCGACAAGCACTTGCAAGTCTTGCCAAAAAAATTGGCTCTACCACTGCGGGAACAACCCTATCGGG AATTGGACTCTCAAAAGTGGATAACCAACCAGCCTGGCTTGTTCTAAATCTCGGCGATAGCCGTGTTTATTGTATTGAAT CTGACAAGATACGTTTACTAACTGAAGATCATTCGATTGTTCACGAGATGATCAAAAGCGGCCAAATAACACCAGAAGAA GCTGCTATTCATCCTTATAACAACATCATAACCCGGGCAGTTAGTTTCAACAGCGAACCCATTCCAGATTTTAGCTTTCT TCCGCTTCGCAGCGGCGTACGGTTTATTATTTGTTCTGATGGACTTACCAAAGAATTGAATGATGCGCAGATCGAGACGC ATGCTACCCGTGGATCTCCTCGCGAGGCTGCTGAGAGTCTTTTATATGCAGCACTCTCTGCTGGGGGAAGGGACAATATT ACGATTATCCTTCTTGATGTTCACGATAAGTAA
Upstream 100 bases:
>100_bases CTTGTGTTCCTATAGATCCGGTTGAGCCAACAATTATTACCCTCTGCACACTTGAAACTCTAGTACAATTTTCGTATCCG CATAAGACTTGTTAAGGGCT
Downstream 100 bases:
>100_bases TATATCCCATTTCGTTAGATGCCTACCTTGGTAGTTCGATCGCATTCAGGAGGCTATTTACACTTTCAATCGCTATTGCA AGCTGTTCATTTAAGAGAGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 250; Mature: 249
Protein sequence:
>250_residues MSNRSTGSDDYIVSGKFSISWASLSHVGHHRESNEDSYSAKPPLWVVADGMGGHACGDIASGVVTSFLSAISSDFVSPQD ITGALRQALASLAKKIGSTTAGTTLSGIGLSKVDNQPAWLVLNLGDSRVYCIESDKIRLLTEDHSIVHEMIKSGQITPEE AAIHPYNNIITRAVSFNSEPIPDFSFLPLRSGVRFIICSDGLTKELNDAQIETHATRGSPREAAESLLYAALSAGGRDNI TIILLDVHDK
Sequences:
>Translated_250_residues MSNRSTGSDDYIVSGKFSISWASLSHVGHHRESNEDSYSAKPPLWVVADGMGGHACGDIASGVVTSFLSAISSDFVSPQD ITGALRQALASLAKKIGSTTAGTTLSGIGLSKVDNQPAWLVLNLGDSRVYCIESDKIRLLTEDHSIVHEMIKSGQITPEE AAIHPYNNIITRAVSFNSEPIPDFSFLPLRSGVRFIICSDGLTKELNDAQIETHATRGSPREAAESLLYAALSAGGRDNI TIILLDVHDK >Mature_249_residues SNRSTGSDDYIVSGKFSISWASLSHVGHHRESNEDSYSAKPPLWVVADGMGGHACGDIASGVVTSFLSAISSDFVSPQDI TGALRQALASLAKKIGSTTAGTTLSGIGLSKVDNQPAWLVLNLGDSRVYCIESDKIRLLTEDHSIVHEMIKSGQITPEEA AIHPYNNIITRAVSFNSEPIPDFSFLPLRSGVRFIICSDGLTKELNDAQIETHATRGSPREAAESLLYAALSAGGRDNIT IILLDVHDK
Specific function: Protein phosphatase that dephosphorylates EF-Tu [H]
COG id: COG0631
COG function: function code T; Serine/threonine protein phosphatase
Gene ontology:
Cell location: Cytoplasm. Membrane; Peripheral membrane protein [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PP2C-like domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015655 - InterPro: IPR001932 - InterPro: IPR014045 [H]
Pfam domain/function: PF00481 PP2C [H]
EC number: =3.1.3.16 [H]
Molecular weight: Translated: 26737; Mature: 26606
Theoretical pI: Translated: 5.52; Mature: 5.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNRSTGSDDYIVSGKFSISWASLSHVGHHRESNEDSYSAKPPLWVVADGMGGHACGDIA CCCCCCCCCCEEEECEEEEEHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHH SGVVTSFLSAISSDFVSPQDITGALRQALASLAKKIGSTTAGTTLSGIGLSKVDNQPAWL HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCEE VLNLGDSRVYCIESDKIRLLTEDHSIVHEMIKSGQITPEEAAIHPYNNIITRAVSFNSEP EEEECCCEEEEEECCCEEEEECCHHHHHHHHHCCCCCCHHCCCCCHHHHHHHHHCCCCCC IPDFSFLPLRSGVRFIICSDGLTKELNDAQIETHATRGSPREAAESLLYAALSAGGRDNI CCCCEEEECCCCCEEEEECCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCE TIILLDVHDK EEEEEEECCC >Mature Secondary Structure SNRSTGSDDYIVSGKFSISWASLSHVGHHRESNEDSYSAKPPLWVVADGMGGHACGDIA CCCCCCCCCEEEECEEEEEHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHH SGVVTSFLSAISSDFVSPQDITGALRQALASLAKKIGSTTAGTTLSGIGLSKVDNQPAWL HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCEE VLNLGDSRVYCIESDKIRLLTEDHSIVHEMIKSGQITPEEAAIHPYNNIITRAVSFNSEP EEEECCCEEEEEECCCEEEEECCHHHHHHHHHCCCCCCHHCCCCCHHHHHHHHHCCCCCC IPDFSFLPLRSGVRFIICSDGLTKELNDAQIETHATRGSPREAAESLLYAALSAGGRDNI CCCCEEEECCCCCEEEEECCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCE TIILLDVHDK EEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11679669 [H]