| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
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The map label for this gene is cls [H]
Identifier: 28572244
GI number: 28572244
Start: 65832
End: 67328
Strand: Direct
Name: cls [H]
Synonym: TW074
Alternate gene names: 28572244
Gene position: 65832-67328 (Clockwise)
Preceding gene: 28572243
Following gene: 28572245
Centisome position: 7.11
GC content: 43.62
Gene sequence:
>1497_bases GTGAAGCCCTATTTGTTTATTTTGGCGGCCCTGCTATTGGCCGACCTTGTCATCCGTATTGGCTGCCTTTTTGTTGTTCC TCGCAATAGACGTCCTAATTCTGCCAACGCCTGGCTTCTCACAATATTCTTTCTGCCGTTTATTGGATGGTTTCTTTTTT TGATAATAGGCAGCTACAAGCTCCCAAAATCAAGAAGAGAAAAACAGGCTCTTATAAACCAGCTTGTTGCAAATGCACTG TCAGATCATGCAGTATTGGACAATGTAGATCTGCAATGGCTACCATCTCTGGTAAAACTAAACAGAAATCTTGGATCTAT GCCGATGGTTGCGGGAACTCGTGTACATATTCTTACTGATACAAGTGTGATTATGGAGCAGATGGTATCTGCCATTGATT CAGCTAAAAGCAGTGTACACGTTGAGTTCTACATCTTTTCGCTGGATGAATTTACGCAGGGCTTTTTCACAAGCCTTGAA AATGCGACCGCCCGCGGGGTAAAGGTTCGGGTTTTATATGATCACATCGCAACTTTGCGCGTCCCTGGATATCTGAATAT GAAGTCTCGCCTTAAGCGCAATGGGATTGAATTTTATCCGATGCTTCCGATTCAGCCCTTCAAGTTGAAATATCAGAGGC CTGACCTGCGCAATCATCGAAAATTGCTTGTAATTGATGATGCAATTGCATTTGTTGGATCGCTAAACATTATTGATCCT TTTTATAACACGAGGGGTCGCAAGAAAATGTTTTGGCAAGATGCGATGCTGCGCCTTGAAGGACCCGTTATAAGCGGGAT AAGCGCGGTTTTTGTCTCTGATTGGTACGCAGAAACAGGCCAGCTCCTGAGAGACTACAGAATTGTAAAAACTTCATCCG GCGATTCCTTCACAGAAAACCGCACACAATCAAACAGTGTTGATAGGAGTTGCCCGAGTACAAATAACGTTTTATGTCAA GTAGTTCCTTCTGGTCCTGGATTTGAGGGGGAAAATAACCTCCAATTGTTTCTAATGCTCCTTTATGCATCGCAAAAACG GGTTGCAATTACATCACCGTACTTCGTGCCGGACGAGGCAATGACTTTAGCAATCGTGTCGGCGACTAAAAGGGGGGTTA GTGTCGAACTGTTTTTATCTGAAAACCATGACCAAAAAATTGTTTACCACGCTCAGTGTTCGTACTACGAACAGCTATTG AGAAGCGGCGTAAAGATTTGGCTATACCGTGCACCAAATTTCTTACACAGCAAATATGTAACTGTTGATGATGATGTTGC CGTTTTTGGATCAAGCAATTTTGATATGCGCTCTTTCAATCTGAATATGGAAATGTCACTGTTGCTCTACAGCAAGGAAT TTGTTGCAAAACTGCAGGCGGTTGAACAGGAAAACCGAGCAAATAGCTCCCTGCTCACCCTCGATGAATGGATGCACCGC GGGAAAATGGACCGCTTGAAAGATAATCTAGCTAGACTTACATCCGCCCTGCAATAG
Upstream 100 bases:
>100_bases CCACACCTGAGACATTAAGCCCTGAGACATTAGGCACCGACTCAGCCGATAAGCGATCTCGCGGAGATTCACAACAGGGC ACCTTGCCACCCGGTGGGTC
Downstream 100 bases:
>100_bases GCACTTATTGAAGAAAAATTTAGGATTCACTCTCGCTGTTTTCTAGTATCCTTGGGTGAGGATATGTTTGAAAGGTTTAC AGATAAAGCCCGCCGGGTTA
Product: phospholipase
Products: NA
Alternate protein names: CL synthase [H]
Number of amino acids: Translated: 498; Mature: 498
Protein sequence:
>498_residues MKPYLFILAALLLADLVIRIGCLFVVPRNRRPNSANAWLLTIFFLPFIGWFLFLIIGSYKLPKSRREKQALINQLVANAL SDHAVLDNVDLQWLPSLVKLNRNLGSMPMVAGTRVHILTDTSVIMEQMVSAIDSAKSSVHVEFYIFSLDEFTQGFFTSLE NATARGVKVRVLYDHIATLRVPGYLNMKSRLKRNGIEFYPMLPIQPFKLKYQRPDLRNHRKLLVIDDAIAFVGSLNIIDP FYNTRGRKKMFWQDAMLRLEGPVISGISAVFVSDWYAETGQLLRDYRIVKTSSGDSFTENRTQSNSVDRSCPSTNNVLCQ VVPSGPGFEGENNLQLFLMLLYASQKRVAITSPYFVPDEAMTLAIVSATKRGVSVELFLSENHDQKIVYHAQCSYYEQLL RSGVKIWLYRAPNFLHSKYVTVDDDVAVFGSSNFDMRSFNLNMEMSLLLYSKEFVAKLQAVEQENRANSSLLTLDEWMHR GKMDRLKDNLARLTSALQ
Sequences:
>Translated_498_residues MKPYLFILAALLLADLVIRIGCLFVVPRNRRPNSANAWLLTIFFLPFIGWFLFLIIGSYKLPKSRREKQALINQLVANAL SDHAVLDNVDLQWLPSLVKLNRNLGSMPMVAGTRVHILTDTSVIMEQMVSAIDSAKSSVHVEFYIFSLDEFTQGFFTSLE NATARGVKVRVLYDHIATLRVPGYLNMKSRLKRNGIEFYPMLPIQPFKLKYQRPDLRNHRKLLVIDDAIAFVGSLNIIDP FYNTRGRKKMFWQDAMLRLEGPVISGISAVFVSDWYAETGQLLRDYRIVKTSSGDSFTENRTQSNSVDRSCPSTNNVLCQ VVPSGPGFEGENNLQLFLMLLYASQKRVAITSPYFVPDEAMTLAIVSATKRGVSVELFLSENHDQKIVYHAQCSYYEQLL RSGVKIWLYRAPNFLHSKYVTVDDDVAVFGSSNFDMRSFNLNMEMSLLLYSKEFVAKLQAVEQENRANSSLLTLDEWMHR GKMDRLKDNLARLTSALQ >Mature_498_residues MKPYLFILAALLLADLVIRIGCLFVVPRNRRPNSANAWLLTIFFLPFIGWFLFLIIGSYKLPKSRREKQALINQLVANAL SDHAVLDNVDLQWLPSLVKLNRNLGSMPMVAGTRVHILTDTSVIMEQMVSAIDSAKSSVHVEFYIFSLDEFTQGFFTSLE NATARGVKVRVLYDHIATLRVPGYLNMKSRLKRNGIEFYPMLPIQPFKLKYQRPDLRNHRKLLVIDDAIAFVGSLNIIDP FYNTRGRKKMFWQDAMLRLEGPVISGISAVFVSDWYAETGQLLRDYRIVKTSSGDSFTENRTQSNSVDRSCPSTNNVLCQ VVPSGPGFEGENNLQLFLMLLYASQKRVAITSPYFVPDEAMTLAIVSATKRGVSVELFLSENHDQKIVYHAQCSYYEQLL RSGVKIWLYRAPNFLHSKYVTVDDDVAVFGSSNFDMRSFNLNMEMSLLLYSKEFVAKLQAVEQENRANSSLLTLDEWMHR GKMDRLKDNLARLTSALQ
Specific function: Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol [H]
COG id: COG1502
COG function: function code I; Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 PLD phosphodiesterase domains [H]
Homologues:
Organism=Escherichia coli, GI1787502, Length=488, Percent_Identity=30.1229508196721, Blast_Score=218, Evalue=7e-58, Organism=Escherichia coli, GI1787007, Length=350, Percent_Identity=26.8571428571429, Blast_Score=96, Evalue=7e-21, Organism=Escherichia coli, GI87081826, Length=410, Percent_Identity=24.390243902439, Blast_Score=84, Evalue=2e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022924 - InterPro: IPR001736 [H]
Pfam domain/function: NA
EC number: 2.7.8.-
Molecular weight: Translated: 56777; Mature: 56777
Theoretical pI: Translated: 9.56; Mature: 9.56
Prosite motif: PS50035 PLD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPYLFILAALLLADLVIRIGCLFVVPRNRRPNSANAWLLTIFFLPFIGWFLFLIIGSYK CCHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC LPKSRREKQALINQLVANALSDHAVLDNVDLQWLPSLVKLNRNLGSMPMVAGTRVHILTD CCHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEC TSVIMEQMVSAIDSAKSSVHVEFYIFSLDEFTQGFFTSLENATARGVKVRVLYDHIATLR HHHHHHHHHHHHHHCCCCEEEEEEEEEHHHHHHHHHHHHHCCCCCCEEEEEEEECHHHEE VPGYLNMKSRLKRNGIEFYPMLPIQPFKLKYQRPDLRNHRKLLVIDDAIAFVGSLNIIDP CCCCCCHHHHHHHCCCEEEECCCCCCCEEEECCCCCCCCCEEEEEEHHHHHHCCCCEECC FYNTRGRKKMFWQDAMLRLEGPVISGISAVFVSDWYAETGQLLRDYRIVKTSSGDSFTEN CCCCCCCCHHHHHHHHHHCCCCHHHCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCC RTQSNSVDRSCPSTNNVLCQVVPSGPGFEGENNLQLFLMLLYASQKRVAITSPYFVPDEA CCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHEEHHCCCCCEEEECCEECCCCH MTLAIVSATKRGVSVELFLSENHDQKIVYHAQCSYYEQLLRSGVKIWLYRAPNFLHSKYV HEEEEEECCCCCCEEEEEEECCCCCEEEEEECHHHHHHHHHCCCEEEEEECCCCHHCCEE TVDDDVAVFGSSNFDMRSFNLNMEMSLLLYSKEFVAKLQAVEQENRANSSLLTLDEWMHR EECCCEEEECCCCCCEEEEECCEEEEEEEHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHC GKMDRLKDNLARLTSALQ CCHHHHHHHHHHHHHHCC >Mature Secondary Structure MKPYLFILAALLLADLVIRIGCLFVVPRNRRPNSANAWLLTIFFLPFIGWFLFLIIGSYK CCHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC LPKSRREKQALINQLVANALSDHAVLDNVDLQWLPSLVKLNRNLGSMPMVAGTRVHILTD CCHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEC TSVIMEQMVSAIDSAKSSVHVEFYIFSLDEFTQGFFTSLENATARGVKVRVLYDHIATLR HHHHHHHHHHHHHHCCCCEEEEEEEEEHHHHHHHHHHHHHCCCCCCEEEEEEEECHHHEE VPGYLNMKSRLKRNGIEFYPMLPIQPFKLKYQRPDLRNHRKLLVIDDAIAFVGSLNIIDP CCCCCCHHHHHHHCCCEEEECCCCCCCEEEECCCCCCCCCEEEEEEHHHHHHCCCCEECC FYNTRGRKKMFWQDAMLRLEGPVISGISAVFVSDWYAETGQLLRDYRIVKTSSGDSFTEN CCCCCCCCHHHHHHHHHHCCCCHHHCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCC RTQSNSVDRSCPSTNNVLCQVVPSGPGFEGENNLQLFLMLLYASQKRVAITSPYFVPDEA CCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHEEHHCCCCCEEEECCEECCCCH MTLAIVSATKRGVSVELFLSENHDQKIVYHAQCSYYEQLLRSGVKIWLYRAPNFLHSKYV HEEEEEECCCCCCEEEEEEECCCCCEEEEEECHHHHHHHHHCCCEEEEEECCCCHHCCEE TVDDDVAVFGSSNFDMRSFNLNMEMSLLLYSKEFVAKLQAVEQENRANSSLLTLDEWMHR EECCCEEEECCCCCCEEEEECCEEEEEEEHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHC GKMDRLKDNLARLTSALQ CCHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Transferring phosphorus-containing groups [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 12219091 [H]