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The map label for this gene is ycfH [C]

Identifier: 326424113

GI number: 326424113

Start: 3068146

End: 3068913

Strand: Reverse

Name: ycfH [C]

Synonym: NA

Alternate gene names: 326424113

Gene position: 3068913-3068146 (Counterclockwise)

Preceding gene: 326424114

Following gene: 27366271

Centisome position: 93.51

GC content: 44.01

Gene sequence:

>768_bases
ATGTTTGTAGATTCTCATTGTCACCTAGACAAATTGAATTACGATGATCTGCACATAGATGTTGCTGACGTGATCAACAA
AGCCAAGCAGGTAAATGTGGAGCAATTGCTGTCTGTCGGTGTGACATTGGATTCTTTTCCAAAAATGCTTGAGCTCATTG
AGCCTTTTGACAACGTACACGCCTCTTGTGGAGTGCACCCATTAGACGTGGAAAGTCCCTTTTGCTTGGACAAAATGAAA
GCCTATGCCTCGCATTCTAAAGTTGTGGCTATTGGTGAAACGGGTCTTGATTATCACTATAAGCCAGAGACGCAAGCATT
GCAGCGTGAACGTTTTGAACAGCAAGTTGCACTCGCGGTTGAGCTGAATAAGCCACTGATTATCCATACGAGGCAAGCGA
GAGAAGATACCTTAGCCATTCTTCGCAATGGGGGGGCAGACAAATGCGGTGGCGTGATTCACTGTTTTACCGAAGATCTT
GCTTTTGCTGAAGCGGCAATGGCGCTCGGTTTTTACATCTCTATCTCTGGAAATGTCACGTTCAGACAAGCAACGGAGCT
TAAAGAGGTTGTAAAACACATTCCTTTGGAACGGTTGTTGATCGAAACCGATTCTCCGTACTTGGCACCTGTACCTCATA
GGGGCAAAGAGAATCAACCCGCCTATGTTATCGAAGTTGCTGCATATATCGCACAGCTTAAAAACATTTCCTTAGCAAGT
GTTGGTGAAAAAACCACCCAAAACTTTAAAAATCTTTTTTTGCGATAG

Upstream 100 bases:
NA

Downstream 100 bases:
NA

Product: putative deoxyribonuclease YcfH

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:
NA

Sequences:

>Translated_255_residues
MFVDSHCHLDKLNYDDLHIDVADVINKAKQVNVEQLLSVGVTLDSFPKMLELIEPFDNVHASCGVHPLDVESPFCLDKMK
AYASHSKVVAIGETGLDYHYKPETQALQRERFEQQVALAVELNKPLIIHTRQAREDTLAILRNGGADKCGGVIHCFTEDL
AFAEAAMALGFYISISGNVTFRQATELKEVVKHIPLERLLIETDSPYLAPVPHRGKENQPAYVIEVAAYIAQLKNISLAS
VGEKTTQNFKNLFLR
>Mature_255_residues
MFVDSHCHLDKLNYDDLHIDVADVINKAKQVNVEQLLSVGVTLDSFPKMLELIEPFDNVHASCGVHPLDVESPFCLDKMK
AYASHSKVVAIGETGLDYHYKPETQALQRERFEQQVALAVELNKPLIIHTRQAREDTLAILRNGGADKCGGVIHCFTEDL
AFAEAAMALGFYISISGNVTFRQATELKEVVKHIPLERLLIETDSPYLAPVPHRGKENQPAYVIEVAAYIAQLKNISLAS
VGEKTTQNFKNLFLR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=269, Percent_Identity=32.7137546468402, Blast_Score=114, Evalue=8e-26,
Organism=Homo sapiens, GI110349734, Length=269, Percent_Identity=32.7137546468402, Blast_Score=112, Evalue=3e-25,
Organism=Homo sapiens, GI226061853, Length=274, Percent_Identity=32.1167883211679, Blast_Score=111, Evalue=8e-25,
Organism=Homo sapiens, GI226061614, Length=257, Percent_Identity=32.295719844358, Blast_Score=106, Evalue=2e-23,
Organism=Homo sapiens, GI225903424, Length=272, Percent_Identity=30.5147058823529, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI226061595, Length=231, Percent_Identity=30.3030303030303, Blast_Score=88, Evalue=7e-18,
Organism=Homo sapiens, GI14042943, Length=202, Percent_Identity=31.1881188118812, Blast_Score=85, Evalue=5e-17,
Organism=Homo sapiens, GI225903439, Length=133, Percent_Identity=36.0902255639098, Blast_Score=75, Evalue=6e-14,
Organism=Escherichia coli, GI1787342, Length=253, Percent_Identity=53.3596837944664, Blast_Score=281, Evalue=4e-77,
Organism=Escherichia coli, GI48994985, Length=241, Percent_Identity=33.6099585062241, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI87082439, Length=256, Percent_Identity=27.34375, Blast_Score=113, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI17559024, Length=271, Percent_Identity=29.1512915129151, Blast_Score=119, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI71980746, Length=264, Percent_Identity=26.1363636363636, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17543026, Length=190, Percent_Identity=31.0526315789474, Blast_Score=84, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI17565396, Length=193, Percent_Identity=30.5699481865285, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI221330018, Length=212, Percent_Identity=34.4339622641509, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI24586117, Length=212, Percent_Identity=34.4339622641509, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI24648690, Length=199, Percent_Identity=31.6582914572864, Blast_Score=92, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 28455; Mature: 28455

Theoretical pI: Translated: 5.94; Mature: 5.94

Prosite motif: PS01137 TATD_1 ; PS01090 TATD_2 ; PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFVDSHCHLDKLNYDDLHIDVADVINKAKQVNVEQLLSVGVTLDSFPKMLELIEPFDNVH
CCCCCCCCCCCCCCCCEEEEHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHH
ASCGVHPLDVESPFCLDKMKAYASHSKVVAIGETGLDYHYKPETQALQRERFEQQVALAV
HHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHEEEEE
ELNKPLIIHTRQAREDTLAILRNGGADKCGGVIHCFTEDLAFAEAAMALGFYISISGNVT
ECCCCEEEEECCCHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHEEEEEEECCEE
FRQATELKEVVKHIPLERLLIETDSPYLAPVPHRGKENQPAYVIEVAAYIAQLKNISLAS
EHHHHHHHHHHHHCCHHHEEEECCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHH
VGEKTTQNFKNLFLR
CCHHHHHHHHHHCCC
>Mature Secondary Structure
MFVDSHCHLDKLNYDDLHIDVADVINKAKQVNVEQLLSVGVTLDSFPKMLELIEPFDNVH
CCCCCCCCCCCCCCCCEEEEHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHH
ASCGVHPLDVESPFCLDKMKAYASHSKVVAIGETGLDYHYKPETQALQRERFEQQVALAV
HHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHEEEEE
ELNKPLIIHTRQAREDTLAILRNGGADKCGGVIHCFTEDLAFAEAAMALGFYISISGNVT
ECCCCEEEEECCCHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHEEEEEEECCEE
FRQATELKEVVKHIPLERLLIETDSPYLAPVPHRGKENQPAYVIEVAAYIAQLKNISLAS
EHHHHHHHHHHHHCCHHHEEEECCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHH
VGEKTTQNFKNLFLR
CCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]