Click here to switch to the map view.

The map label for this gene is yoaD [C]

Identifier: 326423976

GI number: 326423976

Start: 2273127

End: 2274842

Strand: Reverse

Name: yoaD [C]

Synonym: NA

Alternate gene names: 326423976

Gene position: 2274842-2273127 (Counterclockwise)

Preceding gene: 27365583

Following gene: 326423975

Centisome position: 69.32

GC content: 44.23

Gene sequence:

>1716_bases
ATGATTAGGTTTGAACTAGGAAACCAAATCTGCGTTTGCTTGTCCGAAAACGAAATTTCACTAGAGCTCAATAACACACT
CCACGACGCTATTCCCGTCACACAAAATGAGTATGCCATTCTGTCGATTATCGCCGCACACGGTAGCCTAAATGCTCCCG
TCAGTCAGCGCTCTGTCGAGAGAAAAATCACTCAGCAATACAAGGTGGCACTGCCCGAAAATGGGTTTAAAAATGCGGTG
GCCGCTTTAAGAAAGAAGTTTCGCAAGCTCACGGAAGATCACTTCACCACTCATAAAAACATCATCGAAAACATTCATCG
GACAGGATATTTCATCCCATTTCTTATGCAGCATCACTACGACAACGGCCTTTATCAGCAAGAGCGCATTAATCGACACA
CCAAAAACAGTGTCTGGAAAGCGCTGGCCATTGGGCTGAAGAACCGCAAGATCTACTCTGACATCACGCTGGTCATGTTG
GTGACGGCATTGATTTTTTTCGCCGTATGCTATTACGCCATTAACAGTATTGTACGGCACAACTACCTAGACAGCTCACT
CGACATTGCGCAAAACCTGTCTGAAATGAGCTGTTTTGCCAACGAAGCGGCGCTAAGAGAGCAATTTGACAATGTTAAAT
TGGTGGAGTCGAGCATGATGCTCGATAGATTCAACATACGATGCTTGATCACACCAGAGACGGTTTCTCCAGTCAGCGAA
AAAGCCTTCAACGAATGGAGCAAAAACGAAAACTACACCACCCAAGCCTATGAACTCAATGACGCTGTGGTGCTGGTGCG
AGTCAAAAACATCAATCTGTCAAACAGTGTCGAAAATCATATCTCACGCTTTTTCCTCGCAGGAATGAAACTCTCCACCA
ACACCGGTACGTCCCTTGAGATCGGCAATACCAAAGAGCGCTTTTTTCATTTTAAAACCGACAACAACGGCTACAAGGAA
GTGTTTTATGTCTCTGGCCCGTTTCAGAGCATCTTGGCTTTAAGTACGTTCTTTTTGTGTGTGCTTCGATACAAGTCGAT
CCAAGCTTTTCTGTTCTATCTTCTCGCTATTCGACATTTTAGTATCCGCCTAGAGCCGATTTATAACACTTCGACACAAA
AAACCATTCATTTTGAAGCCTTATCCCGATTTAAGGTCAAAAACACACAAAAGTTCATTGAAACCCTGATTGGTAATGGC
TTGTTGCTTACTCACACCATTCTGGTTCTTCGGGCCATTTATGCCAACCAACCATCACTTAAAGTGCCAATTAGCATCAA
TGTCTGCCCCACATTACTGCAAGGGCATAATTTCTCCGCACTCTATCGTGAACTCGCCAGCCTCGATTGTCGTTTGCTGA
CCATTGAGATAACCGAGAATGCCTCTATGTATTACACTGCCGAAATTTACCAAAATGTGGCCAAGTTAAAGCAGCTCGAT
TGCAAAATCAGCATTGATGACTTTGGGACTGGCAACAATAACGTCGCCTTGATCAGCAAGATTAATCCTGACTATCTCAA
AATCGACCGCGAGTTTGTGATTGGGGTAAAAAGTGATGACAAGAAAATTGAAACACTAAGACAATTAATTGCCATGGGTA
AAACCTACCACTGCACTGTGATTGTTGAAGGTGTTGAGACGGCCGACAGCGCCCATTTGCTCACCACCCTTGGAGCCTAT
GTGCATCAGGGTTACTACTATCCGCTTCACTATTAA

Upstream 100 bases:
NA

Downstream 100 bases:
NA

Product: sensory box/GGDEF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 571; Mature: 571

Protein sequence:
NA

Sequences:

>Translated_571_residues
MIRFELGNQICVCLSENEISLELNNTLHDAIPVTQNEYAILSIIAAHGSLNAPVSQRSVERKITQQYKVALPENGFKNAV
AALRKKFRKLTEDHFTTHKNIIENIHRTGYFIPFLMQHHYDNGLYQQERINRHTKNSVWKALAIGLKNRKIYSDITLVML
VTALIFFAVCYYAINSIVRHNYLDSSLDIAQNLSEMSCFANEAALREQFDNVKLVESSMMLDRFNIRCLITPETVSPVSE
KAFNEWSKNENYTTQAYELNDAVVLVRVKNINLSNSVENHISRFFLAGMKLSTNTGTSLEIGNTKERFFHFKTDNNGYKE
VFYVSGPFQSILALSTFFLCVLRYKSIQAFLFYLLAIRHFSIRLEPIYNTSTQKTIHFEALSRFKVKNTQKFIETLIGNG
LLLTHTILVLRAIYANQPSLKVPISINVCPTLLQGHNFSALYRELASLDCRLLTIEITENASMYYTAEIYQNVAKLKQLD
CKISIDDFGTGNNNVALISKINPDYLKIDREFVIGVKSDDKKIETLRQLIAMGKTYHCTVIVEGVETADSAHLLTTLGAY
VHQGYYYPLHY
>Mature_571_residues
MIRFELGNQICVCLSENEISLELNNTLHDAIPVTQNEYAILSIIAAHGSLNAPVSQRSVERKITQQYKVALPENGFKNAV
AALRKKFRKLTEDHFTTHKNIIENIHRTGYFIPFLMQHHYDNGLYQQERINRHTKNSVWKALAIGLKNRKIYSDITLVML
VTALIFFAVCYYAINSIVRHNYLDSSLDIAQNLSEMSCFANEAALREQFDNVKLVESSMMLDRFNIRCLITPETVSPVSE
KAFNEWSKNENYTTQAYELNDAVVLVRVKNINLSNSVENHISRFFLAGMKLSTNTGTSLEIGNTKERFFHFKTDNNGYKE
VFYVSGPFQSILALSTFFLCVLRYKSIQAFLFYLLAIRHFSIRLEPIYNTSTQKTIHFEALSRFKVKNTQKFIETLIGNG
LLLTHTILVLRAIYANQPSLKVPISINVCPTLLQGHNFSALYRELASLDCRLLTIEITENASMYYTAEIYQNVAKLKQLD
CKISIDDFGTGNNNVALISKINPDYLKIDREFVIGVKSDDKKIETLRQLIAMGKTYHCTVIVEGVETADSAHLLTTLGAY
VHQGYYYPLHY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI87081980, Length=228, Percent_Identity=27.6315789473684, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1787055, Length=219, Percent_Identity=29.2237442922374, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI1788502, Length=279, Percent_Identity=25.4480286738351, Blast_Score=80, Evalue=5e-16,
Organism=Escherichia coli, GI87081921, Length=121, Percent_Identity=30.5785123966942, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI87081743, Length=274, Percent_Identity=24.0875912408759, Blast_Score=76, Evalue=7e-15,
Organism=Escherichia coli, GI1788849, Length=222, Percent_Identity=25.2252252252252, Blast_Score=69, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 65287; Mature: 65287

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRFELGNQICVCLSENEISLELNNTLHDAIPVTQNEYAILSIIAAHGSLNAPVSQRSVE
CEEEECCCEEEEEEECCEEEEEECCCHHHCCCCCCCCEEEEEEEECCCCCCCCHHHHHHH
RKITQQYKVALPENGFKNAVAALRKKFRKLTEDHFTTHKNIIENIHRTGYFIPFLMQHHY
HHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHC
DNGLYQQERINRHTKNSVWKALAIGLKNRKIYSDITLVMLVTALIFFAVCYYAINSIVRH
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NYLDSSLDIAQNLSEMSCFANEAALREQFDNVKLVESSMMLDRFNIRCLITPETVSPVSE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHCCCCEEEEEECCCCCHHHH
KAFNEWSKNENYTTQAYELNDAVVLVRVKNINLSNSVENHISRFFLAGMKLSTNTGTSLE
HHHHHHCCCCCCEEEEEEECCEEEEEEEECCCCCHHHHHHHHHHHHHCEEEECCCCCEEE
IGNTKERFFHFKTDNNGYKEVFYVSGPFQSILALSTFFLCVLRYKSIQAFLFYLLAIRHF
ECCCHHHEEEEECCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SIRLEPIYNTSTQKTIHFEALSRFKVKNTQKFIETLIGNGLLLTHTILVLRAIYANQPSL
EEEEEEEECCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCE
KVPISINVCPTLLQGHNFSALYRELASLDCRLLTIEITENASMYYTAEIYQNVAKLKQLD
EEEEEECCCHHHHCCCCHHHHHHHHHCCCEEEEEEEEECCCCEEEEHHHHHHHHHHHHCC
CKISIDDFGTGNNNVALISKINPDYLKIDREFVIGVKSDDKKIETLRQLIAMGKTYHCTV
CEEEECCCCCCCCCEEEEEECCCCCEEECEEEEEEECCCCHHHHHHHHHHHCCCCEEEEE
IVEGVETADSAHLLTTLGAYVHQGYYYPLHY
EEECCCCCCCHHHHHHHHHHHHCCEEEECCC
>Mature Secondary Structure
MIRFELGNQICVCLSENEISLELNNTLHDAIPVTQNEYAILSIIAAHGSLNAPVSQRSVE
CEEEECCCEEEEEEECCEEEEEECCCHHHCCCCCCCCEEEEEEEECCCCCCCCHHHHHHH
RKITQQYKVALPENGFKNAVAALRKKFRKLTEDHFTTHKNIIENIHRTGYFIPFLMQHHY
HHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHC
DNGLYQQERINRHTKNSVWKALAIGLKNRKIYSDITLVMLVTALIFFAVCYYAINSIVRH
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NYLDSSLDIAQNLSEMSCFANEAALREQFDNVKLVESSMMLDRFNIRCLITPETVSPVSE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHCCCCEEEEEECCCCCHHHH
KAFNEWSKNENYTTQAYELNDAVVLVRVKNINLSNSVENHISRFFLAGMKLSTNTGTSLE
HHHHHHCCCCCCEEEEEEECCEEEEEEEECCCCCHHHHHHHHHHHHHCEEEECCCCCEEE
IGNTKERFFHFKTDNNGYKEVFYVSGPFQSILALSTFFLCVLRYKSIQAFLFYLLAIRHF
ECCCHHHEEEEECCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SIRLEPIYNTSTQKTIHFEALSRFKVKNTQKFIETLIGNGLLLTHTILVLRAIYANQPSL
EEEEEEEECCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCE
KVPISINVCPTLLQGHNFSALYRELASLDCRLLTIEITENASMYYTAEIYQNVAKLKQLD
EEEEEECCCHHHHCCCCHHHHHHHHHCCCEEEEEEEEECCCCEEEEHHHHHHHHHHHHCC
CKISIDDFGTGNNNVALISKINPDYLKIDREFVIGVKSDDKKIETLRQLIAMGKTYHCTV
CEEEECCCCCCCCCEEEEEECCCCCEEECEEEEEEECCCCHHHHHHHHHHHCCCCEEEEE
IVEGVETADSAHLLTTLGAYVHQGYYYPLHY
EEECCCCCCCHHHHHHHHHHHHCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]