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The map label for this gene is oppB [H]

Identifier: 27366350

GI number: 27366350

Start: 3149960

End: 3150880

Strand: Reverse

Name: oppB [H]

Synonym: VV1_3081

Alternate gene names: 27366350

Gene position: 3150880-3149960 (Counterclockwise)

Preceding gene: 27366351

Following gene: 27366349

Centisome position: 96.01

GC content: 45.49

Gene sequence:

>921_bases
ATGCTTAAATTCATCATTAAAAGGATCTTTGAGGCGATTCCAACCATGTTGGTTTTGATCACCGTATCTTTCTTTCTTAT
GCGTTTCGCACCAGGTAACCCATTTTCAAGTGAGAAGCCACTTCCACCTGAAGTTATGGCCAATATCGAAGCCAAATATG
GCCTAGATAAGCCGGTGATCGAACAATACACCACTTACTTATTTAACGTTATTCAGGGCGATTTTGGCCCGTCGTTTAAA
TACCTTGACTATTCAGTAAACGAATTGATTTCCGTTGCGTTGCCGGTATCGGCGAAAGTTGGTTTCATTGCGTTTATCTT
TACCGTTATTCTCGGGGTCACGGTCGGCACCATTGCCGCACTCAAACACAATACTTGGGTGGATTACACCATTATGTCTA
CGGCCATGATTGGTGTGGTTATGCCATCGTTTGTGTTAGCCCCCGCGCTGATCTATCTCTTTGCGCTGCATTGGGATCTG
TTCCCGGCAGGCGGTTGGCATGATGGCGGTCTGAAGTATCTTGTCCTACCGGTTATCGGTATGTCGCTGCTTTATGTCGC
GACCTTCGCACGTATCACTCGTGGTTCGATGATCGAAACGCTCAACAGTAACTTTATTCGTACAGCTCGAGCGAAAGGGT
TGAGCTACCCTTACATCATCGTAAAGCACGCACTCAAACCCGCTATGTTGCCTGTGGTTTCTTACATGGGTCCAGCGTTT
GTCGGCATTATTACCGGCTCTGTTGTTATCGAAACCATCTTTGGTCTACCAGGTATTGGTAAGCTATTTGTTAACGCCGC
ATTTAACCGTGACTATTCGCTGGTTATGGGCGTAACGATTCTGATCGGTTTCTTGTTTATTCTGTTCAACGCCATTGTAG
ATATTCTGTTGGCGATGATTGATCCGAAAATTCGCTACTAA

Upstream 100 bases:

>100_bases
CCTAAGCTGATAACTATAAAAAATAGAGACACTGCATGTGGTATAGCCGCATGCAGCGTCTAATTTCATTTAAACTGTCA
CAGACTGAAAGAGTGAGTTT

Downstream 100 bases:

>100_bases
CAGGGACGTATATGGTTATGTTGACGAAAAAAGAGAATCTGGAAGCGCTTGAGAAGTTTTCAGAAAACCTAGAAATTGAA
GGCCGCAGCTTATGGCAAGA

Product: oligopeptide transporter permease

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MLKFIIKRIFEAIPTMLVLITVSFFLMRFAPGNPFSSEKPLPPEVMANIEAKYGLDKPVIEQYTTYLFNVIQGDFGPSFK
YLDYSVNELISVALPVSAKVGFIAFIFTVILGVTVGTIAALKHNTWVDYTIMSTAMIGVVMPSFVLAPALIYLFALHWDL
FPAGGWHDGGLKYLVLPVIGMSLLYVATFARITRGSMIETLNSNFIRTARAKGLSYPYIIVKHALKPAMLPVVSYMGPAF
VGIITGSVVIETIFGLPGIGKLFVNAAFNRDYSLVMGVTILIGFLFILFNAIVDILLAMIDPKIRY

Sequences:

>Translated_306_residues
MLKFIIKRIFEAIPTMLVLITVSFFLMRFAPGNPFSSEKPLPPEVMANIEAKYGLDKPVIEQYTTYLFNVIQGDFGPSFK
YLDYSVNELISVALPVSAKVGFIAFIFTVILGVTVGTIAALKHNTWVDYTIMSTAMIGVVMPSFVLAPALIYLFALHWDL
FPAGGWHDGGLKYLVLPVIGMSLLYVATFARITRGSMIETLNSNFIRTARAKGLSYPYIIVKHALKPAMLPVVSYMGPAF
VGIITGSVVIETIFGLPGIGKLFVNAAFNRDYSLVMGVTILIGFLFILFNAIVDILLAMIDPKIRY
>Mature_306_residues
MLKFIIKRIFEAIPTMLVLITVSFFLMRFAPGNPFSSEKPLPPEVMANIEAKYGLDKPVIEQYTTYLFNVIQGDFGPSFK
YLDYSVNELISVALPVSAKVGFIAFIFTVILGVTVGTIAALKHNTWVDYTIMSTAMIGVVMPSFVLAPALIYLFALHWDL
FPAGGWHDGGLKYLVLPVIGMSLLYVATFARITRGSMIETLNSNFIRTARAKGLSYPYIIVKHALKPAMLPVVSYMGPAF
VGIITGSVVIETIFGLPGIGKLFVNAAFNRDYSLVMGVTILIGFLFILFNAIVDILLAMIDPKIRY

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787497, Length=308, Percent_Identity=67.2077922077922, Blast_Score=423, Evalue=1e-120,
Organism=Escherichia coli, GI1789965, Length=338, Percent_Identity=34.0236686390533, Blast_Score=201, Evalue=4e-53,
Organism=Escherichia coli, GI1787053, Length=308, Percent_Identity=34.0909090909091, Blast_Score=194, Evalue=4e-51,
Organism=Escherichia coli, GI1789888, Length=310, Percent_Identity=31.2903225806452, Blast_Score=174, Evalue=5e-45,
Organism=Escherichia coli, GI1788504, Length=362, Percent_Identity=29.0055248618785, Blast_Score=144, Evalue=5e-36,
Organism=Escherichia coli, GI1787761, Length=327, Percent_Identity=27.82874617737, Blast_Score=135, Evalue=2e-33,
Organism=Escherichia coli, GI1787550, Length=267, Percent_Identity=28.8389513108614, Blast_Score=115, Evalue=4e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33774; Mature: 33774

Theoretical pI: Translated: 9.59; Mature: 9.59

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCCC
>Mature Secondary Structure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CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]