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The map label for this gene is ydfG [C]

Identifier: 27366212

GI number: 27366212

Start: 3000533

End: 3001258

Strand: Reverse

Name: ydfG [C]

Synonym: VV1_2935

Alternate gene names: 27366212

Gene position: 3001258-3000533 (Counterclockwise)

Preceding gene: 27366213

Following gene: 27366211

Centisome position: 91.45

GC content: 49.04

Gene sequence:

>726_bases
ATGAACTCAGTGCTCATTACCGGTGCGACATCGGGGATCGGCAAGCAGCTAGCGAAAGATTTTGCTGATGCAGGTGCAAA
AGTGATTGCATGCGGACGCAATCGTCAGGTTCTCCAAGAGCTAGAAGATTATTCCCCCGCCATAGCAACGATCAGTTTTG
ATGTCACGGATTACCAGCAAACGCGAGAGGCATTATCGGTGCTGCCCTTTATTCCAAACGTTTGGATATTTAACGCCGGT
GATTGTGAATACATGGACGATGGCATCGTTGATGCCCAATTGATGCAACGTGTGTTCAGCGTCAATGTTTTTGGTGTGGT
GAACTGTATCGAGGCCAGCCAAACCCATTTTCAACCTGGACACAAGGTGGTGATTGTCGGTTCTATTGCTTCGGAACTCG
CCCTGCCAAGAGCGGAAGCGTATGGCGCGTCTAAGGCCGCGATTGGGTATTTTGCGCGTAGCTTGTCGCTCAATCTTCAA
GCCAAGGGCATTGATGTTGTCACTGTCTTTCCTGGTTTTGTTGCCACTCCGCTGACGGACAAAAATACGTTTGCAATGCC
GATGATCATCACGGTTGAACAAGCCTCAAAGGCGATTCGGCAACAATTGGCATCCGGGAAGCAGCACATCTATTTTCCCG
CTCGGTTTACCGCTCTTATTCGGTTACTTGCGTTACTGCCTTACCGTTGGCAGAAGGCGTTAGCTTCAAAATTAATTGCC
CAATAA

Upstream 100 bases:

>100_bases
TGATTTACCACCGCGACTATTTTGACCTTGGCGAAATGCTCTATGAAAACCTTCCGTTACTGGGTGGGATCATTCGGGCC
ATAAAGCAGAGGTTAGGGCA

Downstream 100 bases:

>100_bases
ATTCAAAGGATAATGTATGAAAATTGCAATAATAGGTACAGGCATCTCCGGATTAACATGTGGCTACCATCTGCACAAAG
CGCATGACATTACACTGTTT

Product: short chain dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MNSVLITGATSGIGKQLAKDFADAGAKVIACGRNRQVLQELEDYSPAIATISFDVTDYQQTREALSVLPFIPNVWIFNAG
DCEYMDDGIVDAQLMQRVFSVNVFGVVNCIEASQTHFQPGHKVVIVGSIASELALPRAEAYGASKAAIGYFARSLSLNLQ
AKGIDVVTVFPGFVATPLTDKNTFAMPMIITVEQASKAIRQQLASGKQHIYFPARFTALIRLLALLPYRWQKALASKLIA
Q

Sequences:

>Translated_241_residues
MNSVLITGATSGIGKQLAKDFADAGAKVIACGRNRQVLQELEDYSPAIATISFDVTDYQQTREALSVLPFIPNVWIFNAG
DCEYMDDGIVDAQLMQRVFSVNVFGVVNCIEASQTHFQPGHKVVIVGSIASELALPRAEAYGASKAAIGYFARSLSLNLQ
AKGIDVVTVFPGFVATPLTDKNTFAMPMIITVEQASKAIRQQLASGKQHIYFPARFTALIRLLALLPYRWQKALASKLIA
Q
>Mature_241_residues
MNSVLITGATSGIGKQLAKDFADAGAKVIACGRNRQVLQELEDYSPAIATISFDVTDYQQTREALSVLPFIPNVWIFNAG
DCEYMDDGIVDAQLMQRVFSVNVFGVVNCIEASQTHFQPGHKVVIVGSIASELALPRAEAYGASKAAIGYFARSLSLNLQ
AKGIDVVTVFPGFVATPLTDKNTFAMPMIITVEQASKAIRQQLASGKQHIYFPARFTALIRLLALLPYRWQKALASKLIA
Q

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI20149619, Length=196, Percent_Identity=34.1836734693878, Blast_Score=84, Evalue=1e-16,
Organism=Escherichia coli, GI1787820, Length=180, Percent_Identity=27.7777777777778, Blast_Score=64, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI71997402, Length=184, Percent_Identity=30.4347826086957, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17560220, Length=213, Percent_Identity=29.1079812206573, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17563726, Length=247, Percent_Identity=28.7449392712551, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17567345, Length=232, Percent_Identity=26.2931034482759, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI115534694, Length=186, Percent_Identity=32.258064516129, Blast_Score=65, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6322067, Length=222, Percent_Identity=28.3783783783784, Blast_Score=77, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6323882, Length=198, Percent_Identity=31.3131313131313, Blast_Score=72, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24643142, Length=180, Percent_Identity=33.8888888888889, Blast_Score=87, Evalue=7e-18,
Organism=Drosophila melanogaster, GI21358495, Length=190, Percent_Identity=31.5789473684211, Blast_Score=74, Evalue=1e-13,

Paralogues:

None

Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 26187; Mature: 26187

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSVLITGATSGIGKQLAKDFADAGAKVIACGRNRQVLQELEDYSPAIATISFDVTDYQQ
CCCEEEECCCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCEEEEEEECCCCHHH
TREALSVLPFIPNVWIFNAGDCEYMDDGIVDAQLMQRVFSVNVFGVVNCIEASQTHFQPG
HHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHCCCCCCCC
HKVVIVGSIASELALPRAEAYGASKAAIGYFARSLSLNLQAKGIDVVTVFPGFVATPLTD
CEEEEEECCHHHHCCCCHHHCCCCHHHHHHHHHHHEEEEEECCEEEEEECCCCCCCCCCC
KNTFAMPMIITVEQASKAIRQQLASGKQHIYFPARFTALIRLLALLPYRWQKALASKLIA
CCCEEEEEEEEHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHC
Q
C
>Mature Secondary Structure
MNSVLITGATSGIGKQLAKDFADAGAKVIACGRNRQVLQELEDYSPAIATISFDVTDYQQ
CCCEEEECCCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCEEEEEEECCCCHHH
TREALSVLPFIPNVWIFNAGDCEYMDDGIVDAQLMQRVFSVNVFGVVNCIEASQTHFQPG
HHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHCCCCCCCC
HKVVIVGSIASELALPRAEAYGASKAAIGYFARSLSLNLQAKGIDVVTVFPGFVATPLTD
CEEEEEECCHHHHCCCCHHHCCCCHHHHHHHHHHHEEEEEECCEEEEEECCCCCCCCCCC
KNTFAMPMIITVEQASKAIRQQLASGKQHIYFPARFTALIRLLALLPYRWQKALASKLIA
CCCEEEEEEEEHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHC
Q
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1730672 [H]