| Definition | Vibrio vulnificus CMCP6 chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_004459 |
| Length | 3,281,866 |
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The map label for this gene is hsdR [H]
Identifier: 27365375
GI number: 27365375
Start: 2028068
End: 2030512
Strand: Reverse
Name: hsdR [H]
Synonym: VV1_2037
Alternate gene names: 27365375
Gene position: 2030512-2028068 (Counterclockwise)
Preceding gene: 27365376
Following gene: 27365374
Centisome position: 61.87
GC content: 45.52
Gene sequence:
>2445_bases ATGGAATCGACAATCAATAAATCAAAGCTATCTGAAACCGACATCATCACGAAATTCATTCTTCCTGCTATCAAAGATGC TGGATGGGATGATATGTCTCAAATCCGTCAAGAGGTAAAACTACGTGACGGTAAGGTCATTGTTCGTGGTCAGGCAGCGG CGAGGAAAAAAGTTAAGTCTGCGGACATCGTCCTTTACCATAAACCGAGCATGCCTCTAGCCGTTGTCGAAGCAAAAGCG AACAAGCATGAAGTCGGCAAAGGTATGCAACAAGGACTAGATTACGCCAGCCTACTTGAAGTCCCTTTTGTTTTTGCCTC AAATGGCGACGGTTTTATCTTCCACGACAAAACCAACCCAGCTCAACTCGAAACTGAAATTCGACTTGAAGACTTCCCGA CACCTCAGCAACTATGGGACAAGTACTGCGTTTGGAAAGGCTACAAAACCGAGCACCTTCCAGTCATTACTCAAGATTAC CATGATGATGGTAGCGGTAAGTCTCCGCGCTACTATCAGCTACAAGCGATAAACAAAACCGTGGAAGCGGTCGCAGCAGG ACAAAACCGTGTACTCTTGGTTATGGCAACGGGTACGGGCAAAACTTACACTGCATTCCAGATTATTTGGCGACTATGGA AGTCCCGAGCCAAAAAACGCATCCTGTTTTTGGCGGACAGAAACATTCTGGTCGATCAAACCAAGACCAACGACTTCCAA CCGTTTGGCACCGCTATGACCAAAGTCACAGGGAGAAGCGTCGATCCCGCTTACGAAATCCACCTAGCTCTGTATCAAGC TCTGACTGGCCCAGAAGAGCACCAAAAAGCATACAAACAAGTCGATCCAGATTTCTTTGACCTTATTGTCGTTGACGAGT GCCATCGTGGTAGTGCCGCTGAGGACAGCGCATGGCGCGAGATTCTTGAGTATTTCGGTTCAGCGACTCAAATAGGACTA ACCGCGACACCGAAAGAAACCGATATCGTGTCTAACACCGAGTACTTTGGCGACGCCATTTATACCTACTCTCTAAAGCA AGGCATTGAAGACGGTTTCTTAGCCCCTTACAAAGTTGTGCGTGTGGATATCGATGTAGATTTACAAGGTTGGCGACCAA CCAAAGGGCAAGTCGATAAACATGGTGAAGTTATCGAAGACAGGATCTACAACCAGAAAGACTTCGACAGAACCATGGTC ATCGATGAGCGAACAGAGCTTGTTGCAAAGACCATAACCAGCTACCTCAAGCGTACCGACCCTATGGCTAAGACCATTGT GTTCTGTAATGATATTGACCATGCAGAGCGTATGCGTCGAGCGCTAATCAACTGCAATCCTGAGCAAGTTGCTAAAAATG AAAAATACGTAATGAAAATTACAGGTGATGATGAAATCGGCAAAGCTCAGCTTGATAACTTCATTAATCCCAAAAAGGCT TACCCTGTTATCGCAACCACCTCAGAGCTAATGACAACAGGTGTCGATGCCAAAACTTGCAAACTGGTTGTTCTTGACCA AGGCATCCAGTCGATGACTAAGTTTAAGCAGATCATCGGTCGCGGCACTCGTATTGATGATCGTTACGGAAAGCTATGGT TTACCATTCTCGACTTCAAAAAGGCGACTGAACTGTTCGCTGATGAGCGCTTTGATGGTGTACCTGAGCGAGTTAAAGAG ACAAAACCAGAAGACTTCGATACCAATGAAGGACTCGATGAGATCATCGATGATGAGGATGAACTTGAACAAGATAATCC ATTTGAAGGGGATGATATTGACCCTGAAAGCATCCATGAACCAGAGGCTTCATACGACTCAGGTTCATCTCCTTCTGACG GTAGCAATTCCGATGATGATTGGCAGGATGAAAACCGAGTTAGAAAGTTCCATGTCAACGGTGTAACGGTGAAAGCCATT GCCGAACGTGTTCAATACTACGATTCCGACGGTAAACTCGTAACCGAATCGTTCAAAGACTATACCCGCAAGACGATGGC AAAACAGTTCACCTCAATGGATGACTTTGTTAAGCGCTGGCAAGATGCCGATAAAAAGCAAGCAATCATTGATGAACTGG CAGAGGAAGGCATTATCTGGGAAGCGTTAGAGCTGGAAGTAGGCAAAGATCTCGACCCATTCGACATGATTTGTCATGTC GTGTATGACCAACCAGCACTCACCAGAAAAGAACGCGCTGACAACGTCAAAAAGCGCAACTACTTCACTAAGTACGGTGA AACGGCTCAGCAGGTGTTGAACAACTTACTAGACAAGTACGCAGACGAAGGCGTTCAAGAGATTGAAAATATTCATGTAC TCAAAGTTAAGCCTTTTGACGAGATGGGACGCCCTGCTGAAATCGTCAAAAAGTGCTTTGGTGGTAAAGAGCAGTATTTA GAAGCAATTTCTGAGTTGGAAGCTGAGATTTATCAATCAGCCTAA
Upstream 100 bases:
>100_bases GAAAACACCATCCACTTCACTGATAAGTCAGTATCTTTTCTGCTTTTATGCATCCTTTGGTATAGTCATGAAATGCATTT GTACTGAGCTGGCTAATCGC
Downstream 100 bases:
>100_bases TCACCATTTAAACCAAGCTAGAGTTTCTTTAGCTTGGTTAACGACCTCAAGTCACAATGCATATCTATATTTTTGGTAAC CTAAATTCAGGTAAAACAAC
Product: type I restriction-modification system, restriction subunit R
Products: NA
Alternate protein names: R.EcoAI [H]
Number of amino acids: Translated: 814; Mature: 814
Protein sequence:
>814_residues MESTINKSKLSETDIITKFILPAIKDAGWDDMSQIRQEVKLRDGKVIVRGQAAARKKVKSADIVLYHKPSMPLAVVEAKA NKHEVGKGMQQGLDYASLLEVPFVFASNGDGFIFHDKTNPAQLETEIRLEDFPTPQQLWDKYCVWKGYKTEHLPVITQDY HDDGSGKSPRYYQLQAINKTVEAVAAGQNRVLLVMATGTGKTYTAFQIIWRLWKSRAKKRILFLADRNILVDQTKTNDFQ PFGTAMTKVTGRSVDPAYEIHLALYQALTGPEEHQKAYKQVDPDFFDLIVVDECHRGSAAEDSAWREILEYFGSATQIGL TATPKETDIVSNTEYFGDAIYTYSLKQGIEDGFLAPYKVVRVDIDVDLQGWRPTKGQVDKHGEVIEDRIYNQKDFDRTMV IDERTELVAKTITSYLKRTDPMAKTIVFCNDIDHAERMRRALINCNPEQVAKNEKYVMKITGDDEIGKAQLDNFINPKKA YPVIATTSELMTTGVDAKTCKLVVLDQGIQSMTKFKQIIGRGTRIDDRYGKLWFTILDFKKATELFADERFDGVPERVKE TKPEDFDTNEGLDEIIDDEDELEQDNPFEGDDIDPESIHEPEASYDSGSSPSDGSNSDDDWQDENRVRKFHVNGVTVKAI AERVQYYDSDGKLVTESFKDYTRKTMAKQFTSMDDFVKRWQDADKKQAIIDELAEEGIIWEALELEVGKDLDPFDMICHV VYDQPALTRKERADNVKKRNYFTKYGETAQQVLNNLLDKYADEGVQEIENIHVLKVKPFDEMGRPAEIVKKCFGGKEQYL EAISELEAEIYQSA
Sequences:
>Translated_814_residues MESTINKSKLSETDIITKFILPAIKDAGWDDMSQIRQEVKLRDGKVIVRGQAAARKKVKSADIVLYHKPSMPLAVVEAKA NKHEVGKGMQQGLDYASLLEVPFVFASNGDGFIFHDKTNPAQLETEIRLEDFPTPQQLWDKYCVWKGYKTEHLPVITQDY HDDGSGKSPRYYQLQAINKTVEAVAAGQNRVLLVMATGTGKTYTAFQIIWRLWKSRAKKRILFLADRNILVDQTKTNDFQ PFGTAMTKVTGRSVDPAYEIHLALYQALTGPEEHQKAYKQVDPDFFDLIVVDECHRGSAAEDSAWREILEYFGSATQIGL TATPKETDIVSNTEYFGDAIYTYSLKQGIEDGFLAPYKVVRVDIDVDLQGWRPTKGQVDKHGEVIEDRIYNQKDFDRTMV IDERTELVAKTITSYLKRTDPMAKTIVFCNDIDHAERMRRALINCNPEQVAKNEKYVMKITGDDEIGKAQLDNFINPKKA YPVIATTSELMTTGVDAKTCKLVVLDQGIQSMTKFKQIIGRGTRIDDRYGKLWFTILDFKKATELFADERFDGVPERVKE TKPEDFDTNEGLDEIIDDEDELEQDNPFEGDDIDPESIHEPEASYDSGSSPSDGSNSDDDWQDENRVRKFHVNGVTVKAI AERVQYYDSDGKLVTESFKDYTRKTMAKQFTSMDDFVKRWQDADKKQAIIDELAEEGIIWEALELEVGKDLDPFDMICHV VYDQPALTRKERADNVKKRNYFTKYGETAQQVLNNLLDKYADEGVQEIENIHVLKVKPFDEMGRPAEIVKKCFGGKEQYL EAISELEAEIYQSA >Mature_814_residues MESTINKSKLSETDIITKFILPAIKDAGWDDMSQIRQEVKLRDGKVIVRGQAAARKKVKSADIVLYHKPSMPLAVVEAKA NKHEVGKGMQQGLDYASLLEVPFVFASNGDGFIFHDKTNPAQLETEIRLEDFPTPQQLWDKYCVWKGYKTEHLPVITQDY HDDGSGKSPRYYQLQAINKTVEAVAAGQNRVLLVMATGTGKTYTAFQIIWRLWKSRAKKRILFLADRNILVDQTKTNDFQ PFGTAMTKVTGRSVDPAYEIHLALYQALTGPEEHQKAYKQVDPDFFDLIVVDECHRGSAAEDSAWREILEYFGSATQIGL TATPKETDIVSNTEYFGDAIYTYSLKQGIEDGFLAPYKVVRVDIDVDLQGWRPTKGQVDKHGEVIEDRIYNQKDFDRTMV IDERTELVAKTITSYLKRTDPMAKTIVFCNDIDHAERMRRALINCNPEQVAKNEKYVMKITGDDEIGKAQLDNFINPKKA YPVIATTSELMTTGVDAKTCKLVVLDQGIQSMTKFKQIIGRGTRIDDRYGKLWFTILDFKKATELFADERFDGVPERVKE TKPEDFDTNEGLDEIIDDEDELEQDNPFEGDDIDPESIHEPEASYDSGSSPSDGSNSDDDWQDENRVRKFHVNGVTVKAI AERVQYYDSDGKLVTESFKDYTRKTMAKQFTSMDDFVKRWQDADKKQAIIDELAEEGIIWEALELEVGKDLDPFDMICHV VYDQPALTRKERADNVKKRNYFTKYGETAQQVLNNLLDKYADEGVQEIENIHVLKVKPFDEMGRPAEIVKKCFGGKEQYL EAISELEAEIYQSA
Specific function: The EcoAI enzyme recognizes 5'-GAGN(7)GTCA-3'. Subunit R is required for both nuclease and ATPase activities, but not for modification [H]
COG id: COG4096
COG function: function code V; Type I site-specific restriction-modification system, R (restriction) subunit and related helicases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI226510991, Length=576, Percent_Identity=28.2986111111111, Blast_Score=157, Evalue=2e-39, Organism=Escherichia coli, GI1788511, Length=415, Percent_Identity=23.6144578313253, Blast_Score=74, Evalue=4e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR006935 - InterPro: IPR013670 - InterPro: IPR007409 [H]
Pfam domain/function: PF08463 EcoEI_R_C; PF04313 HSDR_N; PF04851 ResIII [H]
EC number: =3.1.21.3 [H]
Molecular weight: Translated: 92758; Mature: 92758
Theoretical pI: Translated: 4.74; Mature: 4.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MESTINKSKLSETDIITKFILPAIKDAGWDDMSQIRQEVKLRDGKVIVRGQAAARKKVKS CCCCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEECCHHHHHHCCC ADIVLYHKPSMPLAVVEAKANKHEVGKGMQQGLDYASLLEVPFVFASNGDGFIFHDKTNP CCEEEEECCCCCEEEEECCCCHHHHHHHHHHCCCHHHHHHCCEEEECCCCEEEEECCCCC AQLETEIRLEDFPTPQQLWDKYCVWKGYKTEHLPVITQDYHDDGSGKSPRYYQLQAINKT CCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCEEEHHHHHHH VEAVAAGQNRVLLVMATGTGKTYTAFQIIWRLWKSRAKKRILFLADRNILVDQTKTNDFQ HHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCEEEEEECCCEEEECCCCCCCC PFGTAMTKVTGRSVDPAYEIHLALYQALTGPEEHQKAYKQVDPDFFDLIVVDECHRGSAA HHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCC EDSAWREILEYFGSATQIGLTATPKETDIVSNTEYFGDAIYTYSLKQGIEDGFLAPYKVV CHHHHHHHHHHCCCCEEECEEECCCCCCCCCCCHHHCCHHEEEHHHHCCCCCCCCCEEEE RVDIDVDLQGWRPTKGQVDKHGEVIEDRIYNQKDFDRTMVIDERTELVAKTITSYLKRTD EEEEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCC PMAKTIVFCNDIDHAERMRRALINCNPEQVAKNEKYVMKITGDDEIGKAQLDNFINPKKA CHHHEEEEECCCHHHHHHHHHHHCCCHHHHCCCCCEEEEECCCCCCCHHHHHHCCCCCCC YPVIATTSELMTTGVDAKTCKLVVLDQGIQSMTKFKQIIGRGTRIDDRYGKLWFTILDFK CCEEEEHHHHHHCCCCCHHEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCEEEHHHHHH KATELFADERFDGVPERVKETKPEDFDTNEGLDEIIDDEDELEQDNPFEGDDIDPESIHE HHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCHHHHCCCHHHCCCCCCCCCCCCCHHHCCC PEASYDSGSSPSDGSNSDDDWQDENRVRKFHVNGVTVKAIAERVQYYDSDGKLVTESFKD CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEHHHHHHHHHHCCCCCCEEHHHHHH YTRKTMAKQFTSMDDFVKRWQDADKKQAIIDELAEEGIIWEALELEVGKDLDPFDMICHV HHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHH VYDQPALTRKERADNVKKRNYFTKYGETAQQVLNNLLDKYADEGVQEIENIHVLKVKPFD HHCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCHH EMGRPAEIVKKCFGGKEQYLEAISELEAEIYQSA HHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MESTINKSKLSETDIITKFILPAIKDAGWDDMSQIRQEVKLRDGKVIVRGQAAARKKVKS CCCCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEECCHHHHHHCCC ADIVLYHKPSMPLAVVEAKANKHEVGKGMQQGLDYASLLEVPFVFASNGDGFIFHDKTNP CCEEEEECCCCCEEEEECCCCHHHHHHHHHHCCCHHHHHHCCEEEECCCCEEEEECCCCC AQLETEIRLEDFPTPQQLWDKYCVWKGYKTEHLPVITQDYHDDGSGKSPRYYQLQAINKT CCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCEEEHHHHHHH VEAVAAGQNRVLLVMATGTGKTYTAFQIIWRLWKSRAKKRILFLADRNILVDQTKTNDFQ HHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCEEEEEECCCEEEECCCCCCCC PFGTAMTKVTGRSVDPAYEIHLALYQALTGPEEHQKAYKQVDPDFFDLIVVDECHRGSAA HHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCC EDSAWREILEYFGSATQIGLTATPKETDIVSNTEYFGDAIYTYSLKQGIEDGFLAPYKVV CHHHHHHHHHHCCCCEEECEEECCCCCCCCCCCHHHCCHHEEEHHHHCCCCCCCCCEEEE RVDIDVDLQGWRPTKGQVDKHGEVIEDRIYNQKDFDRTMVIDERTELVAKTITSYLKRTD EEEEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCC PMAKTIVFCNDIDHAERMRRALINCNPEQVAKNEKYVMKITGDDEIGKAQLDNFINPKKA CHHHEEEEECCCHHHHHHHHHHHCCCHHHHCCCCCEEEEECCCCCCCHHHHHHCCCCCCC YPVIATTSELMTTGVDAKTCKLVVLDQGIQSMTKFKQIIGRGTRIDDRYGKLWFTILDFK CCEEEEHHHHHHCCCCCHHEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCEEEHHHHHH KATELFADERFDGVPERVKETKPEDFDTNEGLDEIIDDEDELEQDNPFEGDDIDPESIHE HHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCHHHHCCCHHHCCCCCCCCCCCCCHHHCCC PEASYDSGSSPSDGSNSDDDWQDENRVRKFHVNGVTVKAIAERVQYYDSDGKLVTESFKD CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEHHHHHHHHHHCCCCCCEEHHHHHH YTRKTMAKQFTSMDDFVKRWQDADKKQAIIDELAEEGIIWEALELEVGKDLDPFDMICHV HHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHH VYDQPALTRKERADNVKKRNYFTKYGETAQQVLNNLLDKYADEGVQEIENIHVLKVKPFD HHCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCHH EMGRPAEIVKKCFGGKEQYLEAISELEAEIYQSA HHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8412658 [H]