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The map label for this gene is yfcN [C]

Identifier: 27365324

GI number: 27365324

Start: 1972368

End: 1972898

Strand: Reverse

Name: yfcN [C]

Synonym: VV1_1979

Alternate gene names: 27365324

Gene position: 1972898-1972368 (Counterclockwise)

Preceding gene: 27365327

Following gene: 27365322

Centisome position: 60.12

GC content: 47.65

Gene sequence:

>531_bases
ATGAGTAACAAAGACAACGACCTTGACGACGATTTCTCATTATTCCGGGAAGCAGTACAGGGCATAAAAAAGTTGCCTCA
GGATACCATAGTCCAGCAACCAAACAGAAATACTAAACAAAAAGAAATCAAGCGTATTAGCCGTGAAGCCAGTGACTCTG
AATTCTATTTCTCAGACGAGTTTGTTCCTCTTTTAAACGAAGAAGGGCCGACCCGTTACGCACGTGACGACGTATCCACC
TATGAAGTCAAACGCCTGCGACGCGGGGTGTATGTTCCCGATGTGTTTCTTGATATGCACGGGATGACACAACAAGAAGC
GAAGCGTGAACTTGGCGCAATGATCGCTTACTGTGTGAAAAATGAAGTACATTGTGCCTGCGTGCAGCACGGTATCGGGA
AGCACATTCTCAAGCAAAAAACGCCACGGTGGCTCGCGCAGCATCCTGATGTGCTGGCTTTCCACCAAGCACCACTTGAA
TTTGGCGGAGATGGCGCTCTGCTTGTTCTGCTCTCAATCCCTGAGAAATAA

Upstream 100 bases:

>100_bases
TGAAGCTCAGAAACGGCCTCTTCTACAAAAATCTTATCCAAAATTGCCTCCGAAAAGCGCTACAATACTGCCAATGATGT
AAATATTTAGTGTTAAACCC

Downstream 100 bases:

>100_bases
AACCGCTCTCACGTCTGCAGGTGACTATCTCCTGCAGCGTCCTTCTTTCCGTTATCGTGCTCTAACCACTATTGGGCTCT
AACTACGGTCTTAAACTAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 175

Protein sequence:

>176_residues
MSNKDNDLDDDFSLFREAVQGIKKLPQDTIVQQPNRNTKQKEIKRISREASDSEFYFSDEFVPLLNEEGPTRYARDDVST
YEVKRLRRGVYVPDVFLDMHGMTQQEAKRELGAMIAYCVKNEVHCACVQHGIGKHILKQKTPRWLAQHPDVLAFHQAPLE
FGGDGALLVLLSIPEK

Sequences:

>Translated_176_residues
MSNKDNDLDDDFSLFREAVQGIKKLPQDTIVQQPNRNTKQKEIKRISREASDSEFYFSDEFVPLLNEEGPTRYARDDVST
YEVKRLRRGVYVPDVFLDMHGMTQQEAKRELGAMIAYCVKNEVHCACVQHGIGKHILKQKTPRWLAQHPDVLAFHQAPLE
FGGDGALLVLLSIPEK
>Mature_175_residues
SNKDNDLDDDFSLFREAVQGIKKLPQDTIVQQPNRNTKQKEIKRISREASDSEFYFSDEFVPLLNEEGPTRYARDDVSTY
EVKRLRRGVYVPDVFLDMHGMTQQEAKRELGAMIAYCVKNEVHCACVQHGIGKHILKQKTPRWLAQHPDVLAFHQAPLEF
GGDGALLVLLSIPEK

Specific function: Unknown

COG id: COG2840

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Smr domain

Homologues:

Organism=Escherichia coli, GI1788671, Length=176, Percent_Identity=56.8181818181818, Blast_Score=215, Evalue=2e-57,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1979_VIBVU (Q8DB44)

Other databases:

- EMBL:   AE016795
- RefSeq:   NP_760852.1
- ProteinModelPortal:   Q8DB44
- SMR:   Q8DB44
- GeneID:   1178878
- GenomeReviews:   AE016795_GR
- KEGG:   vvu:VV1_1979
- HOGENOM:   HBG700609
- OMA:   TRYARDD
- ProtClustDB:   PRK04946
- BioCyc:   VVUL216895:VV1_1979-MONOMER
- HAMAP:   MF_01042
- InterPro:   IPR002625
- InterPro:   IPR022990
- SMART:   SM00463

Pfam domain/function: PF01713 Smr

EC number: NA

Molecular weight: Translated: 20157; Mature: 20026

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS50828 SMR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNKDNDLDDDFSLFREAVQGIKKLPQDTIVQQPNRNTKQKEIKRISREASDSEFYFSDE
CCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEECCC
FVPLLNEEGPTRYARDDVSTYEVKRLRRGVYVPDVFLDMHGMTQQEAKRELGAMIAYCVK
CHHHCCCCCCCCHHHCCHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHC
NEVHCACVQHGIGKHILKQKTPRWLAQHPDVLAFHQAPLEFGGDGALLVLLSIPEK
CCHHHHHHHHHHHHHHHHHCCCHHHHCCCCEEEEECCCCCCCCCCEEEEEEECCCC
>Mature Secondary Structure 
SNKDNDLDDDFSLFREAVQGIKKLPQDTIVQQPNRNTKQKEIKRISREASDSEFYFSDE
CCCCCCCCHHHHHHHHHHHHHHHCCHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEECCC
FVPLLNEEGPTRYARDDVSTYEVKRLRRGVYVPDVFLDMHGMTQQEAKRELGAMIAYCVK
CHHHCCCCCCCCHHHCCHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHC
NEVHCACVQHGIGKHILKQKTPRWLAQHPDVLAFHQAPLEFGGDGALLVLLSIPEK
CCHHHHHHHHHHHHHHHHHCCCHHHHCCCCEEEEECCCCCCCCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA