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The map label for this gene is ydhM [C]

Identifier: 27364504

GI number: 27364504

Start: 1074831

End: 1075412

Strand: Reverse

Name: ydhM [C]

Synonym: VV1_1081

Alternate gene names: 27364504

Gene position: 1075412-1074831 (Counterclockwise)

Preceding gene: 27364507

Following gene: 326423796

Centisome position: 32.77

GC content: 45.53

Gene sequence:

>582_bases
ATGTCATCTGAAGAGCAGAACGACAAGCAACAACAAATCCTGGCTGCGGCAGAGAAGTTGATTGCGGAGTCCGGTTTTCA
GGGTCTATCGATGAGTAAATTGGCCAAAGAAGCAGGCGTCGCAGCAGGTACGATTTATCGTTATTTTGACGATAAAGAAC
ACCTGCTGGATGAACTCAGGCTACGTATTACTCAACGAGTTGCCACGGCGATTCAAGCCAACGTAACCCGTGATATGCCT
TTGAAACAACAATATCGCACCATGTGGCTAAACACATGGAATTTAGCGGCTTCAAACTTGTCTACTTTGAGCAACCGTAT
TCAGTACGAATCACTACCTTGCTCGAATAGCCACAAAACCCGCGAGCTAGAAAAGAAAATGTTTCACCAAGTTGCTTTAA
TGTTCGATATGGGCAAGGAGCAAGGGGTGTTCAAAACGCTGGATAACGAAATTTTGTTTGGTCTAAGTTTGGAGACCAGC
GTCAGGCTAGCGAAAAAACACGCATTAGGCTTTTACCAACTGGATGACAAGGCACTTGACGCTGCCATCGACGCCAGCTG
GGATGCAATCATTAATCACTAA

Upstream 100 bases:

>100_bases
TCATTGACAAGATTTTTACTCAATAGCACACATAGCACTTGCCAATATGGCTATTGTTTCCGCTATAATGAATGAACGTT
CATTCACTGGTGGATAACCC

Downstream 100 bases:

>100_bases
TTGGAGTTCTTAATAGAATGAAAAAGTGGACCTTTTTTATGTTACTTATCGCCATTCTGCTGTTTGGCAGCGTGATAGGT
TTCAACCTCTTCAAACAAAA

Product: transcriptional regulator TetR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 192

Protein sequence:

>193_residues
MSSEEQNDKQQQILAAAEKLIAESGFQGLSMSKLAKEAGVAAGTIYRYFDDKEHLLDELRLRITQRVATAIQANVTRDMP
LKQQYRTMWLNTWNLAASNLSTLSNRIQYESLPCSNSHKTRELEKKMFHQVALMFDMGKEQGVFKTLDNEILFGLSLETS
VRLAKKHALGFYQLDDKALDAAIDASWDAIINH

Sequences:

>Translated_193_residues
MSSEEQNDKQQQILAAAEKLIAESGFQGLSMSKLAKEAGVAAGTIYRYFDDKEHLLDELRLRITQRVATAIQANVTRDMP
LKQQYRTMWLNTWNLAASNLSTLSNRIQYESLPCSNSHKTRELEKKMFHQVALMFDMGKEQGVFKTLDNEILFGLSLETS
VRLAKKHALGFYQLDDKALDAAIDASWDAIINH
>Mature_192_residues
SSEEQNDKQQQILAAAEKLIAESGFQGLSMSKLAKEAGVAAGTIYRYFDDKEHLLDELRLRITQRVATAIQANVTRDMPL
KQQYRTMWLNTWNLAASNLSTLSNRIQYESLPCSNSHKTRELEKKMFHQVALMFDMGKEQGVFKTLDNEILFGLSLETSV
RLAKKHALGFYQLDDKALDAAIDASWDAIINH

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 21898; Mature: 21767

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSEEQNDKQQQILAAAEKLIAESGFQGLSMSKLAKEAGVAAGTIYRYFDDKEHLLDELR
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHCCHHHHHHHHH
LRITQRVATAIQANVTRDMPLKQQYRTMWLNTWNLAASNLSTLSNRIQYESLPCSNSHKT
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
RELEKKMFHQVALMFDMGKEQGVFKTLDNEILFGLSLETSVRLAKKHALGFYQLDDKALD
HHHHHHHHHHHHHHHHCCCCCCHHHHHCCCEEEECCHHHHHHHHHHHCCCEEEECHHHHH
AAIDASWDAIINH
HHHCCCHHHHCCC
>Mature Secondary Structure 
SSEEQNDKQQQILAAAEKLIAESGFQGLSMSKLAKEAGVAAGTIYRYFDDKEHLLDELR
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHCCHHHHHHHHH
LRITQRVATAIQANVTRDMPLKQQYRTMWLNTWNLAASNLSTLSNRIQYESLPCSNSHKT
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
RELEKKMFHQVALMFDMGKEQGVFKTLDNEILFGLSLETSVRLAKKHALGFYQLDDKALD
HHHHHHHHHHHHHHHHCCCCCCHHHHHCCCEEEECCHHHHHHHHHHHCCCEEEECHHHHH
AAIDASWDAIINH
HHHCCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]